View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_low_12 (Length: 524)
Name: NF17716_low_12
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_12 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 33223819 - 33224326
Alignment:
| Q |
18 |
aacccctccccaatgattcttagtctcattgacaaaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaagatcaattgtaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223819 |
aacccctccccaatgattcttagtctcattgacaaaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaagatcaattgtaagg |
33223918 |
T |
|
| Q |
118 |
agaagatttttgtttttagctctgtctataacaaatgtaataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223919 |
agaagatttttgtttttagctctgtctataacaaatgtcataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcat |
33224018 |
T |
|
| Q |
218 |
ataatatcattaatgagaaatgaacttctgataaacctgcggagtatgacacagaccaagtctc--atggtccatcatgttcagcaccataagatgtccg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33224019 |
ataatatcattaatgagaaatgaacttctgataaacctgcggagtatgacacagaccaagtctcatatggtccatcatgttcagcaccataagatgtccg |
33224118 |
T |
|
| Q |
316 |
catcatacctatttctccatatattcttatacgagcattggttcctacatttattttctgctcatggcgaagaaatcttccattttctttcaggtcatgg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33224119 |
catcatacctatttctccatatattcttatacgagcattggttcctacatttattttctgctcat-gcgaagaaatcttccattttctttcaggtcatgg |
33224217 |
T |
|
| Q |
416 |
tgaaaactatttcccattgaatatataatgttttcgcaacaacgttaacttaaatatatatttatttttatcgtaaatttaatttgcacaatcatgcaaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33224218 |
tgaaaactatttcccattgaatatataatgttttcgcaacaacgttaacttaaatatatatttatttttatcgtaaatttaatttgcacaatcatgcaaa |
33224317 |
T |
|
| Q |
516 |
taattcaat |
524 |
Q |
| |
|
||||||||| |
|
|
| T |
33224318 |
taattcaat |
33224326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 33226785 - 33226872
Alignment:
| Q |
18 |
aacccctccccaatgattcttagtctcattgacaaaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaaga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
33226785 |
aacccctccccaatgattcttagtctcattaacaaaccttgttccgtaagattttccagagtccttaatttcaattggatcaagaaga |
33226872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 337 - 515
Target Start/End: Original strand, 33227055 - 33227230
Alignment:
| Q |
337 |
tattcttatacgagcattggttcctacatttattttctgctcatggcgaagaaatcttccattttctttcaggtcatggtgaaaactatttcccattgaa |
436 |
Q |
| |
|
||||| |||||||||| |||||| |||| ||||| ||| | ||| ||||||||||||||||| |||| |||||| ||| |||||||||||||||| |
|
|
| T |
33227055 |
tattcctatacgagcaccggttcccacatatatttcctggtaatgattaagaaatcttccatttt---tcagctcatggcgaagactatttcccattgaa |
33227151 |
T |
|
| Q |
437 |
tatataa-tgttttcgcaacaacgttaacttaaatatatatttatttttatcgtaaatttaatttgcacaatcatgcaaa |
515 |
Q |
| |
|
||| ||| ||||||| ||||||||||||||||| | | | ||| ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
33227152 |
tatgtaaatgttttcacaacaacgttaacttaatttttttttt-tttgtatcgtaaatttaattttcacaatcatgcaaa |
33227230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 282
Target Start/End: Original strand, 33226902 - 33227043
Alignment:
| Q |
138 |
tctgtctataacaaatgtaataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcatataatatcattaatgagaaa |
237 |
Q |
| |
|
||||| ||||||||||||||||||| | ||| | ||| ||||||||| |||||||||| |||||| | ||||||||||||| |||||||||| |
|
|
| T |
33226902 |
tctgtgtataacaaatgtaataaacataggtactccaaaactgaactttaatagattgatgtaaccattt---ttgtcatataatatcgttaatgagaat |
33226998 |
T |
|
| Q |
238 |
tgaacttctgataaacctgcggagtatgacacagaccaagtctca |
282 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
33226999 |
caaacttctgaccaacgtgcggagtatgacaccgaccaagtctca |
33227043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University