View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_14 (Length: 512)
Name: NF17716_low_14
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 500
Target Start/End: Original strand, 28381815 - 28382304
Alignment:
| Q |
13 |
catcaaaacctatccaagacctcaccaa-ggccataaatgctcacatctttatgattattattttgagcagcccttgattattattagtaaaagtatgtt |
111 |
Q |
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| T |
28381815 |
catcaaagcatatccaagatctcaccaaaggccataaatggtcacatctttatgtttattattttgagcagcccttgattattattagtaaaagtatgtt |
28381914 |
T |
|
| Q |
112 |
actctacttgccctcttgcatcatttccagtttccatagtgggtttccttctcatttcctccaaccacttaaaacacgtttgcattagtaattaagagtt |
211 |
Q |
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| T |
28381915 |
actctacttgccctcttgcatcatttccaatttccatagtgggtttccttctcatttcctccaaccacttaaaacacgtttgcattagtaattaagagtt |
28382014 |
T |
|
| Q |
212 |
atgctacgtgacaaccactttaattttatatagttgcaaaaatttgtgatttgcc-attccttctggtgtcggtgcgactatgtcttaatgatattcatg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28382015 |
atgctacgtgacaaccactttaattttatatagttgcaaaaatttgtgattagcatattccttctggtgtcggtgcgactatgtcttaatgatattcatg |
28382114 |
T |
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| Q |
311 |
ttttcttgagtggccatgtccccaaaaagcacccgtggcacaaaggacacaacacaaaaatattttaattatttatttatatgtggttttaacttactca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28382115 |
ttttcttgagtggccatgtccccaaaaagcacccgtggcacaaaggacacaacacaaaaatattttaattatttatttatatgtggttttaacttactca |
28382214 |
T |
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| Q |
411 |
cgtgaatttaatactctttattgaaacatattttattcatatatatttttggttccactcccttggacattaccactagtagtggaaatt |
500 |
Q |
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| T |
28382215 |
cgtgaatttaatactctttattgaaacatattttattcatatatatttttggttccactcccttggacattaccactagtagtggaaatt |
28382304 |
T |
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