View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_15 (Length: 498)
Name: NF17716_low_15
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 28621425 - 28620951
Alignment:
| Q |
18 |
ctcctgactcagactctgcattaagaacggccacatctttctctcattctcaaactatttcatatgtaggccttttttcctttgttaaaagttttttatt |
117 |
Q |
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| T |
28621425 |
ctcctgactcagactctgcattaaggacggccacatctttctctcattctcaaattatttcatatgcaggccttttttcctttgttaaaagttttttatt |
28621326 |
T |
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| Q |
118 |
tgaagcctgggcgcttgttttagtagcttggtcatacttttcatccttttccttccgcttgtgggttgcttctcttcctcttgttctccacaagttcata |
217 |
Q |
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| T |
28621325 |
tgaagcctgggcgcttgttttagtagcttggtcatacttttcatccttttccttccgcttgtgggttgcttctcttcctcttgttctccacaagttcata |
28621226 |
T |
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| Q |
218 |
ttccattttttctatcctaattgagacaatttacagcgaacatttactgtaaaccatctcatttacaatgaagaaaggaaaaactagtttaactgttaat |
317 |
Q |
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| T |
28621225 |
ttccattttttctatcctaattgagacaatttacagcg-acatttactgtaaaccatctcatttacaatgaagaaaggaaaaactagtttaactgttaat |
28621127 |
T |
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| Q |
318 |
gactgtttactttgaacatgagcaatgttaaatatgtaaatcttaaagaatcgtatacagttaaaaaattgttagtttcatgtcttacgttgaaaatact |
417 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28621126 |
gactatttactttgaacatgaacaatgttaaatatgtaaatcttaaagaatcgtatacagttaaaaaattgttagtttcatgtcttacgttgaaaatact |
28621027 |
T |
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| Q |
418 |
ttgtttgggtttgtattgatttccaaaatagctactataaatatgtatttacggtaattataaaacctttgcttct |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
28621026 |
ttgtttgggtttgtattgatttccaaaatagctactataaatatgtatttacggtagttataaaacttttgcttct |
28620951 |
T |
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