View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_16 (Length: 497)
Name: NF17716_low_16
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 49186156 - 49186634
Alignment:
| Q |
18 |
gctagtttataatttatattggtattcgtataattcatagagtattactcattgttatttaacgacggttgagt--attgttctattgtattgtcaatct |
115 |
Q |
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| T |
49186156 |
gctagtctataattcatattggtattcgtataattcatagagtattactcattgttatttaacgacggttgagtgtattgttctattgtattgtcaatct |
49186255 |
T |
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| Q |
116 |
agttggtatgatgtcttctataataataatttcacttcaattattaaattaacatgatttttcacaaatcgtatgtttcactaattcaattattaaatta |
215 |
Q |
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| T |
49186256 |
agttggtatgatctcttctataataatattttcacttcaattattaaattaacatgatttttcacaaatcgtatgtttcactaattcaattattaaatta |
49186355 |
T |
|
| Q |
216 |
aaagttactattattgaa----tatattagttcaacaagtaatcataatagatacttcgtcaaatgacttcaactaaatgtcaagcattttttaaataca |
311 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49186356 |
aaagttactattattgaatgaatatattagttcaacaagtaatcataatagatacttcgtcaaatgacttcaactaaatgtcaagcattttttaaataca |
49186455 |
T |
|
| Q |
312 |
agttaatgtcaaggacaacatgtacacaaatagttaattgactttaatgttgtgtacataattattcttaaaagtttcttcctatttcaagacatgattt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
49186456 |
agttaatgtcaaggacaacatgtacacaaatagttaattgactttaatgttgtgtacataattattcttaaaagattcttcccatttcaaaacatgattt |
49186555 |
T |
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| Q |
412 |
aatgaaatagaaacaagagcttttgtaatttcatgacttgcaaaaactacaatgtgacgttaatcctttattcttctca |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49186556 |
aatgaaatagaaacaagagcttttgtaatttcatgacttgcaaaaactacaatgtgacgttaatcctttatccttctca |
49186634 |
T |
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