View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_low_17 (Length: 497)
Name: NF17716_low_17
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 2319193 - 2318713
Alignment:
| Q |
1 |
tggattctccagaagcttcgaagagcaataacatttcttcttctctctccactatcaatgccgccacaaacaatccttctgatgaatcccctcaagttca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319193 |
tggattctccagaagcttcgaagatcaataacatttcttcttctctctccactatcaatgccgccacaaacaatccttctgatgaatcccctcaagttca |
2319094 |
T |
|
| Q |
101 |
agtatacttcatttcttaattaattaattaactcttcctctttttctatcaagatcagattgttatgttgtttgtctgtctttatgtttcgaatctaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319093 |
agtatacttcatttcttaattaattaattaactcttcctctttttctatcaagatcagattcttatgttgtttgtctgtctttatgtttcgaatctaatc |
2318994 |
T |
|
| Q |
201 |
aatatatatgtcatttattgttgtttcgaattacatttgcttttgatgaaatttctgtctaccttaaagttgttgtcatgtccctgaaaaaacaagctaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2318993 |
aatatatatgtcatttattgttgtttcgaattacatttgctttcgatgaaatttctgtctaccttaaagttgttgtcatgtcactgaaaaaacaagctaa |
2318894 |
T |
|
| Q |
301 |
ggctgtgaacagtgggaccccttcacagatatgcgggagctttatactcgggttgccnnnnnnnnnnnnnnnggattcatcaaacaacattgtctcattt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2318893 |
ggctgtgaacagtgggaccccttcacagatatgcgggagctttatactcgggttgcc-ttttttttttttttggattcatcaaacaacattgtctcattt |
2318795 |
T |
|
| Q |
401 |
tttccgcgtgaaaatgaatataaggttatcaattaggtaagtcttaatcaatgttgtccattgtggattgcaaaaaatcgca |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2318794 |
tttccgcgtgaaaatgaatataaggttatcaattaggtaagtcttaatcaatgttgtccattgtggattgcaaaaaatcgca |
2318713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 2309615 - 2309581
Alignment:
| Q |
444 |
ttaatcaatgttgtccattgtggattgcaaaaaat |
478 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
2309615 |
ttaatcaatgttgtccattgtggattgcgaaaaat |
2309581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University