View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_18 (Length: 488)
Name: NF17716_low_18
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 29027038 - 29026568
Alignment:
| Q |
18 |
ctcatggcggcgcttctgttgatgaaagctcttaacttgatttgcgctgccgaggataaacattatgtcaaggtcactggaactccacatggttgggatg |
117 |
Q |
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| T |
29027038 |
ctcatggcggcgcttctgttgatgaaagctcttaacttgatttgcgctgccgaggataaacattatgtcaaggtcactggaactccacatggttgggatg |
29026939 |
T |
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| Q |
118 |
ttctcttttacattttccagtttatccgtgtcgtgttgcttttcaccgtcattgtattgattggaactggatggtcgtttttgaagccctttttgcaaga |
217 |
Q |
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| T |
29026938 |
ttctcttttacattttccagtttatccgtgtcgtgttgcttttcaccgtcattgtattgattggaactggatggtcgtttttgaagccgtttttgcaaga |
29026839 |
T |
|
| Q |
218 |
aagggagaagaaggtgcttatgattgttattcctcttcaggttttggcaaatttagcttccgttgtaatcggcgaaactggcccttttattaaggattgg |
317 |
Q |
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| T |
29026838 |
aagggagaagaaggtgcttatgattgttattcctcttcaggttttggcaaatttagcttccgttgtaatcggcgaaactggcccttttattaaggattgg |
29026739 |
T |
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| Q |
318 |
gttacttggaatcaggttttcttacttgttgatatcatttgttgttgtgcaattatcttccctattgtatggtccattaaatcgcttagggaaacctcga |
417 |
Q |
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| T |
29026738 |
gttacttggaatcaggttttcttgcttgttgatatcatttgttgttgtgcaattatcttccctattgtatggtccattaaatcgcttagggaaacctcga |
29026639 |
T |
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| Q |
418 |
agaccgacggaaaagctgctaggaatcttgcgaagttaacactttttaggcagttttacattgttgttatc |
488 |
Q |
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| T |
29026638 |
agaccgacggaaaagctgctaggaatcttgcgaagttaacactttttaggcagttttacattgttgttatc |
29026568 |
T |
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Back To:
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Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 57 - 487
Target Start/End: Complemental strand, 40406295 - 40405865
Alignment:
| Q |
57 |
atttgcgctgccgaggataaacattatgtcaaggtcactggaactccacatggttgggatgttctcttttacattttccagtttatccgtgtcgtgttgc |
156 |
Q |
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| T |
40406295 |
atttgtgctgctgaagataagcattatgttaaggttactggtttacctcatggatgggatgtattgttctacatttttcagtttattcgtgttgttgtgt |
40406196 |
T |
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| Q |
157 |
ttttcaccgtcattgtattgattggaactggatggtcgtttttgaagccctttttgcaagaaagggagaagaaggtgcttatgattgttattcctcttca |
256 |
Q |
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| T |
40406195 |
tgtttactgttattgttttgatcggtactggttggtcgtttctgaagccatttttgcaagatagggaaaagaaagtgttgatgattgtgattcctctgca |
40406096 |
T |
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| Q |
257 |
ggttttggcaaatttagcttccgttgtaatcggcgaaactggcccttttattaaggattgggttacttggaatcaggttttcttacttgttgatatcatt |
356 |
Q |
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|||||||| ||||||||||| ||||| ||||| || || || |||||||| || ||||||||||||||||||||||| || || ||||||||||| ||| |
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| T |
40406095 |
agttttggctaatttagcttctgttgtgatcggagagaccggtccttttatcaaagattgggttacttggaatcaggtgtttttgcttgttgatattatt |
40405996 |
T |
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| Q |
357 |
tgttgttgtgcaattatcttccctattgtatggtccattaaatcgcttagggaaacctcgaagaccgacggaaaagctgctaggaatcttgcgaagttaa |
456 |
Q |
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| T |
40405995 |
tgttgttgtgctattatttttcctatcgtttggtctattagatcgcttagggaaacgtcgaaaacagatggaaaagcttcgaggaatcttgcgaagttga |
40405896 |
T |
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| Q |
457 |
cactttttaggcagttttacattgttgttat |
487 |
Q |
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| T |
40405895 |
cactttttaggcagttttatattgttgttat |
40405865 |
T |
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