View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_2 (Length: 697)

Name: NF17716_low_2
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_2
NF17716_low_2
[»] chr8 (4 HSPs)
chr8 (493-683)||(39524322-39524512)
chr8 (158-329)||(39525846-39526016)
chr8 (326-460)||(39525679-39525811)
chr8 (218-285)||(41415537-41415604)
[»] chr7 (2 HSPs)
chr7 (290-324)||(41215831-41215865)
chr7 (336-384)||(41215713-41215762)
[»] chr3 (2 HSPs)
chr3 (218-288)||(4475738-4475808)
chr3 (218-288)||(42740929-42740999)
[»] chr2 (1 HSPs)
chr2 (218-288)||(42970595-42970665)
[»] chr5 (1 HSPs)
chr5 (218-289)||(33694437-33694508)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 493 - 683
Target Start/End: Complemental strand, 39524512 - 39524322
Alignment:
Q  493 ttaaacctacgcaagagagagaattttaatacacgtggcttgttgctgtgataggggaacagtaagaactgtgtgtatggtactgtaggcaagtctattc 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39524512 ttaaacctacgcaagagagagaattttaatacacgtggcttgttgttgtgataggggaacagtaagaactgtgtgtatggtactgtaggcaagtctattc 39524413  T
Q  593 caaaactaaaacccctttgtaacgattgttaccatcccttccaaccttcttcacgttccttctcctaaaaccctaaaaatggcgtctctgc 683  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39524412 caaaactaaaactcctttgtaacgattgttcccatcccttccaaccttcttcacgttccttctcctaaaaccctaaaaatggcgtctctgc 39524322  T

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Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 158 - 329
Target Start/End: Complemental strand, 39526016 - 39525846
Alignment:
Q  158 cgtcacctgtccaaaccgataaccgagtacatgaacgaacgagattgggccttgattgtgcaaccgtgggtttgatcggattggcagttctggtccaccc 257  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  39526016 cgtcacccgtccaaaccgataaccaagtacatgaacgaacgggattgg-ccttgattgtgcaaccgtgggtttgatcggattggcagttctggttcaccg 39525918  T
Q  258 ccgactgaaaccgaccgtttatccacccctaaaagaagggaacacaaagaaagggttggaaggaaccaactt 329  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39525917 tcgaccgaaaccgaccgtttatccacccctaaaagaagggaacacaaagaaagggttggaaggaaccgactt 39525846  T

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Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 326 - 460
Target Start/End: Complemental strand, 39525811 - 39525679
Alignment:
Q  326 acttcagacgaatcatcacaaacatcgatcctccaaaactcccgtaaacaaccattctcctagcttttcatttcccgatttctcatagatttttcaattt 425  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  39525811 acttcagacaaatcatcacaaacatcaatcctccaaaactcccgtaaacaaccattctcctagcttttcacttcccgatttctc--agatttttcaattt 39525714  T
Q  426 tatttgattctcgtaggttttataacggtttaacc 460  Q
    |||||||||||||||||||||||||||||||||||    
T  39525713 tatttgattctcgtaggttttataacggtttaacc 39525679  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 41415537 - 41415604
Alignment:
Q  218 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccc 285  Q
    ||||||||||||||| |||||||||| ||  |||||  | ||||| |||||||||||||| |||||||    
T  41415537 caaccgtgggtttgaacggattggcattttcggtccgtcaccgaccgaaaccgaccgtttgtccaccc 41415604  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 41215865 - 41215831
Alignment:
Q  290 aagaagggaacacaaagaaagggttggaaggaacc 324  Q
    |||||||||||||||||||||||||||||||||||    
T  41215865 aagaagggaacacaaagaaagggttggaaggaacc 41215831  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 41215762 - 41215713
Alignment:
Q  336 aatcatcacaaacatcga-tcctccaaaactcccgtaaacaaccattctc 384  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  41215762 aatcatcacaaacatcaaatcctccaaaactcccgtaagcaaccattctc 41215713  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 4475808 - 4475738
Alignment:
Q  218 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta 288  Q
    ||||||||||||||| |||||||||| ||  |||||  | ||||| |||||||||||||| ||||||||||    
T  4475808 caaccgtgggtttgaacggattggcattttcggtccgtcgccgaccgaaaccgaccgtttgtccaccccta 4475738  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 42740929 - 42740999
Alignment:
Q  218 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta 288  Q
    ||||||||||||||| |||||||||| ||  |||||    ||||| |||||||||||||| ||||||||||    
T  42740929 caaccgtgggtttgaacggattggcattttcggtccgttgccgaccgaaaccgaccgtttgtccaccccta 42740999  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 42970595 - 42970665
Alignment:
Q  218 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta 288  Q
    ||||||||||||||| |||||||||| ||  |||||  | ||||| |||||||||||||| ||||||||||    
T  42970595 caaccgtgggtttgaacggattggcattttcggtccgtcgccgaccgaaaccgaccgtttgtccaccccta 42970665  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 33694437 - 33694508
Alignment:
Q  218 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccacccctaa 289  Q
    ||||||||||||||| |||||||||| ||  |||||    ||||| |||||||||||||| |||||||||||    
T  33694437 caaccgtgggtttgaacggattggcattttcggtccgttgccgaccgaaaccgaccgtttgtccacccctaa 33694508  T

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