View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_20 (Length: 479)

Name: NF17716_low_20
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_20
NF17716_low_20
[»] chr8 (7 HSPs)
chr8 (1-314)||(32323258-32323571)
chr8 (394-473)||(32323651-32323730)
chr8 (25-132)||(18257421-18257531)
chr8 (11-186)||(34108913-34109090)
chr8 (49-132)||(3693514-3693598)
chr8 (1-115)||(20698264-20698376)
chr8 (148-196)||(29608694-29608742)
[»] chr5 (9 HSPs)
chr5 (5-314)||(21178223-21178536)
chr5 (148-304)||(25815274-25815429)
chr5 (37-186)||(6447745-6447892)
chr5 (11-132)||(11783038-11783159)
chr5 (28-196)||(18183707-18183874)
chr5 (158-245)||(36409756-36409843)
chr5 (211-314)||(10912199-10912302)
chr5 (46-141)||(34946039-34946133)
chr5 (149-197)||(10912154-10912202)
[»] chr1 (7 HSPs)
chr1 (26-242)||(16948803-16949018)
chr1 (33-244)||(28111420-28111629)
chr1 (33-168)||(16904761-16904895)
chr1 (33-104)||(2758222-2758294)
chr1 (25-128)||(24573980-24574082)
chr1 (394-468)||(16904495-16904569)
chr1 (224-264)||(6432965-6433005)
[»] chr7 (2 HSPs)
chr7 (32-314)||(25032691-25032965)
chr7 (108-190)||(3404025-3404107)
[»] chr2 (1 HSPs)
chr2 (25-314)||(15545049-15545339)
[»] chr3 (3 HSPs)
chr3 (33-243)||(36644710-36644922)
chr3 (141-246)||(22516758-22516863)
chr3 (131-196)||(31585521-31585587)
[»] chr4 (2 HSPs)
chr4 (3-68)||(6527951-6528016)
chr4 (33-196)||(36690177-36690339)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 32323258 - 32323571
Alignment:
Q  1 ttagtatgccattatatttttcgatcactatgtttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||    
T  32323258 ttagtatgccattatatttttcgatcactatatttattttctataaactttatatgatattctataatgaactttttgtgactgaatatatttagccttg 32323357  T
Q  101 aacacttaagtttttaagtttaattacactaatcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctg 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  32323358 aacacttaagtttttaagattaattacactaatcattaactagaatgcataacaatgaaaaattaagtgaaattttgtttgcaatttacataagaatctg 32323457  T
Q  201 aatcatcaatgaatatcagtttatgattctttgttgcaatttcgtttaaattttttgatttattacatgcggtgttatttgtgcactcttataccaacga 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32323458 aatcatcaatgaatatcagtttatgattctttgttgcaattttgtttaaattttttgatttattacatgcggtgttatttgtgcactcttataccaacga 32323557  T
Q  301 ttcactactcatga 314  Q
    || ||| |||||||    
T  32323558 ttaactgctcatga 32323571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 394 - 473
Target Start/End: Original strand, 32323651 - 32323730
Alignment:
Q  394 agtctcgtcatactcaagcaagcctnnnnnnnctcatatttcttatatctttggaatttcttataattttagataaaatt 473  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32323651 agtctcgtcatactcaagcaagcctcaaaaaactcatatttcttatatctttggaatttcttataattttagataaaatt 32323730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 18257421 - 18257531
Alignment:
Q  25 tcactatgtttattttctgtaaactttatatgatattctataatgaa---ttttttgtgactctatatattttgccttgaacacttaagtttttaagttt 121  Q
    ||||||| |||||||||||| ||||||||| |||||| |||||||||   |||||| | |||| || ||||| |||||||||||| |||||| |||||||    
T  18257421 tcactatatttattttctgtgaactttataagatattgtataatgaactttttttttttactcaatttatttagccttgaacactcaagtttctaagttt 18257520  T
Q  122 aattacactaa 132  Q
    | |||||||||    
T  18257521 atttacactaa 18257531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 34109090 - 34108913
Alignment:
Q  11 attatatttttcgatcactatgtttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaag 110  Q
    |||||||||||   ||||||| ||||||| |||| |||||||||||||||||||||||||||||||| | |||| || || || ||||| |||| | ||     
T  34109090 attatatttttttgtcactatatttatttcctgtgaactttatatgatattctataatgaatttttt-ttactcaatttacttagcctttaacattcaat 34108992  T
Q  111 tttttaagtttaattacactaatcattaactagaata---cataacaattaaaaataaagtgaaattttatttgcaatt 186  Q
    ||| |||| ||||||||| |||  |||   || ||||   ||||||||| ||||||||||| || |||| |||||||||    
T  34108991 tttctaagcttaattacaataactattgtttataataatgcataacaatgaaaaataaagtaaagttttgtttgcaatt 34108913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 3693598 - 3693514
Alignment:
Q  49 tttatatgatattctataatgaat-tttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacactaa 132  Q
    ||||||||||||||| || ||||  ||||| | |||| || ||||| |||||||||||| ||||||||||| |||||||||||||    
T  3693598 tttatatgatattctttattgaacgttttttttactcaatttatttagccttgaacactcaagtttttaagcttaattacactaa 3693514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 20698376 - 20698264
Alignment:
Q  1 ttagtatgccattatatttttcgatcactatgtttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttg 100  Q
    ||||||||  ||||||||||| | || | || ||||| || |||| ||||||||||||||| ||||||||||||||  |||||| || |||| ||||||     
T  20698376 ttagtatgttattatattttttggtctcaatatttatattttgtagactttatatgatattatataatgaattttt--tgactcaatctattgtgcctta 20698279  T
Q  101 aacacttaagttttt 115  Q
    |||| ||| ||||||    
T  20698278 aacaattatgttttt 20698264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 29608742 - 29608694
Alignment:
Q  148 cataacaattaaaaataaagtgaaattttatttgcaatttacataagaa 196  Q
    ||||||||| ||||||||||| || |||| ||||||||||||| |||||    
T  29608742 cataacaatgaaaaataaagtaaagttttgtttgcaatttacaaaagaa 29608694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 21178223 - 21178536
Alignment:
Q  5 tatgccattatatttttcgatcactatgtttattttctgtaaactttatatgatattctataatga--attttttgtgactctatatattttgccttgaa 102  Q
    ||||| |||||| |||| | ||||||| |||||||| |  ||||||||||||||||| ||||||||  ||||||| | || |||| ||||| ||||||||    
T  21178223 tatgctattatactttttggtcactatatttattttttacaaactttatatgatattgtataatgagcatttttttt-accctatttatttagccttgaa 21178321  T
Q  103 cacttaagtttttaagtttaattacactaatcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatt---tacataagaatct 199  Q
    |||| |||||| |||  |||||||||| ||  ||||  | |||| ||||||||| |||| |||||| ||||||| |||||||||   |||| | |||| |    
T  21178322 cactcaagtttctaaccttaattacaccaactattatttggaatgcataacaatgaaaactaaagtaaaattttgtttgcaatttactacaaatgaatat 21178421  T
Q  200 gaatcatcaatgaatatcagtttatgattctttgttgcaatttcgtttaaattttttgatttattacatgcggtgttatttgtgcactcttataccaacg 299  Q
     |||| | || |||||| |  ||||||||| ||||| |||||||| | || ||| || | ||||| ||||| |||||||||  ||||||| ||||||| |    
T  21178422 taatccttaacgaatattaacttatgattccttgttacaatttcgctcaattttgtttacttattgcatgcagtgttatttacgcactctcataccaatg 21178521  T
Q  300 attcactactcatga 314  Q
    ||||| | |||||||    
T  21178522 attcagtcctcatga 21178536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 25815274 - 25815429
Alignment:
Q  148 cataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagtttatgattctttgttgcaatttcgttt 247  Q
    ||||||||| ||||||||||| ||||||| |||||| |||||| |||||  | |||| | || |||||||  ||||||||| ||||||||||||| ||      
T  25815274 cataacaataaaaaataaagtaaaattttgtttgcactttacaaaagaacattaatccttaacgaatatccatttatgatt-tttgttgcaattttgtga 25815372  T
Q  248 aaattttttgatttattacatgcggtgttatttgtgcactcttataccaacgattca 304  Q
    | ||||||| |  |||| ||||  | ||||||| |||||||| ||||||| ||||||    
T  25815373 atatttttttacctattgcatgtagcgttatttatgcactctcataccaatgattca 25815429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 6447745 - 6447892
Alignment:
Q  37 ttttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacactaatcat 136  Q
    |||| |||||| |||||||||| || ||||||||| |||||   |||| |||||||| |||||| | || |||||||  || ||||||||||| |||| |    
T  6447745 ttttttgtaaattttatatgattttgtataatgaactttttt--actcaatatatttagccttgtatacataagtttcaaactttaattacacgaatcct 6447842  T
Q  137 taactagaatacataacaattaaaaataaagtgaaattttatttgcaatt 186  Q
    |||||| |||  |||||| |   ||||||||||||||||| | |||||||    
T  6447843 taactaaaatgtataacattgtgaaataaagtgaaattttttctgcaatt 6447892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 11783159 - 11783038
Alignment:
Q  11 attatatttttcgatcactatgtttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaag 110  Q
    ||||||||||| | ||| ||| ||||| |||||| |||||| ||||||||| |||||||||  |||| |||||| || |||||  |||| || ||| ||     
T  11783159 attatattttttgttcattatatttatattctgtgaactttttatgatattgtataatgaacattttttgactcaatttatttaacctttaagactcaaa 11783060  T
Q  111 tttttaagtttaattacactaa 132  Q
    ||| |||| |||||||||||||    
T  11783059 tttctaagcttaattacactaa 11783038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 18183874 - 18183707
Alignment:
Q  28 ctatgtttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattac 127  Q
    |||| |||||||| ||| |||||||||||||||| || ||||| |||||| | |||| |||||||    ||| ||||||||||||| ||   ||||||      
T  18183874 ctatatttattttttgtgaactttatatgatattatagaatgagtttttt-ttactcaatatattgaaacttaaacacttaagtttctagacttaattgt 18183776  T
Q  128 actaatcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaa 196  Q
    ||||||| ||||| ||||| | ||||||| ||||| |||||||  |||| ||| || |||||| |||||    
T  18183775 actaatccttaacgagaatccttaacaatgaaaaagaaagtgaggttttgttttcactttacagaagaa 18183707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 36409756 - 36409843
Alignment:
Q  158 aaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagtttatgattctttgttgcaatttcgt 245  Q
    ||||||||||| || |||| ||||||||||||| |||||  | |||| | || ||| |||| |||||||||| |||||||||||||||    
T  36409756 aaaaataaagtaaagttttgtttgcaatttacaaaagaacattaatccttaacgaaaatcaatttatgattccttgttgcaatttcgt 36409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 10912199 - 10912302
Alignment:
Q  211 gaatatcagtttatgattctttgttgcaatttcgtttaaattttttgatttattacatgcggtgttatttgtgcactcttataccaacgattcactactc 310  Q
    |||||| | |||||||||| ||||| |||||| | | ||||||||| | ||||| ||||  ||||| |||  ||||||| ||||||||||||||  ||||    
T  10912199 gaatattaatttatgattccttgttacaattttgctcaaatttttttacttattgcatgtagtgttttttacgcactctcataccaacgattcaacactc 10912298  T
Q  311 atga 314  Q
    ||||    
T  10912299 atga 10912302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 34946133 - 34946039
Alignment:
Q  46 aactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacactaatcattaact 141  Q
    ||||||||||||| || ||||||||| ||||| | |||| |||||||   |||| ||| ||||| |||||| |||||||| |||||||| ||||||    
T  34946133 aactttatatgatgttatataatgaacttttt-ttactcaatatattagaccttaaactcttaaatttttaggtttaattgcactaatccttaact 34946039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 10912154 - 10912202
Alignment:
Q  149 ataacaattaaaaataaagtgaaattttatttgcaatttacataagaat 197  Q
    |||||||| ||||||||||| || |||| ||||||||||||| ||||||    
T  10912154 ataacaatgaaaaataaagtaaagttttgtttgcaatttacaaaagaat 10912202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 16948803 - 16949018
Alignment:
Q  26 cactatgtttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaatt 125  Q
    |||||| |||||||| ||| | ||||||| |||| | |||||| || ||||| |||||| || |||||  ||||||||| |||| ||| |||| ||||||    
T  16948803 cactatttttattttatgtgagctttataggatagtgtataattaactttttttgactccatttatttaaccttgaacagttaaatttctaagcttaatt 16948902  T
Q  126 acactaatcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagtttatg 225  Q
    ||||||||| || |||||| ||||||||||| |||||| |||| |  |||| ||| ||||||||| |||||  | || ||| || |||||||| ||||||    
T  16948903 acactaatcgttgactagagtacataacaatgaaaaattaagtaatgttttgtttccaatttacaaaagaactttaaacattaacgaatatcaatttatg 16949002  T
Q  226 attctttgttgcaattt 242  Q
    ||||  |||||||||||    
T  16949003 attc-atgttgcaattt 16949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 244
Target Start/End: Original strand, 28111420 - 28111629
Alignment:
Q  33 tttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacactaa 132  Q
    |||||||||||| |||| ||||||||||| |||| |||| ||||| | |||| || ||||| | |||||||||| |||||| |||| || ||||||||||    
T  28111420 tttattttctgtgaactctatatgatattgtatattgaacttttt-tcactcaatttatttagacttgaacactcaagtttctaagcttgattacactaa 28111518  T
Q  133 tcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagtttatgattcttt 232  Q
       |||  |||| | ||||||||| ||||||||||| || |||| ||||||||||||| |||||| | |||| | || |||||| | |||||||||| ||    
T  28111519 cttttatttaga-tgcataacaatgaaaaataaagtaaagttttgtttgcaatttacaaaagaatattaatctttaacgaatattaatttatgattcctt 28111617  T
Q  233 gttgcaatttcg 244  Q
    ||| ||||||||    
T  28111618 gttacaatttcg 28111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 16904895 - 16904761
Alignment:
Q  33 tttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacactaa 132  Q
    |||||||| ||| || ||||||||||| | ||||||||| ||||| | |||| || ||||| | || |||||||||||||| ||||  || |||||| ||    
T  16904895 tttattttatgtgaattttatatgatagtgtataatgaacttttttttactcaatttatttagtctcgaacacttaagtttctaagcatatttacaccaa 16904796  T
Q  133 tcattaactagaatacataacaattaaaaataaagt 168  Q
    ||||| |||||| | ||||| ||| |||||||||||    
T  16904795 tcatt-actagagtgcataataatgaaaaataaagt 16904761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 2758222 - 2758294
Alignment:
Q  33 tttattttctgtaaactttatatgatattctataatgaa-ttttttgtgactctatatattttgccttgaaca 104  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||| |||||| || || || ||||||||||    
T  2758222 tttattttctgtgaactttatatgatattgtataatgaacttttttttgactcaatttacttagccttgaaca 2758294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 24573980 - 24574082
Alignment:
Q  25 tcactatgtttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaat 124  Q
    ||||||| ||||||||||  |||||||||||||| || ||||||| ||||||  |||||| || ||||| ||||| |||||| |||||| |||  |||||    
T  24573980 tcactatatttattttctagaaactttatatgatgttgtataatg-atttttgttgactcgatttatttagccttcaacactcaagtttctaatcttaat 24574078  T
Q  125 taca 128  Q
    ||||    
T  24574079 taca 24574082  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 16904569 - 16904495
Alignment:
Q  394 agtctcgtcatactcaagcaagcctnnnnnnnctcatatttcttatatctttggaatttcttataattttagata 468  Q
    ||||||||||||||||| |||| ||       ||||||||||||||||||||| ||||| |||||||||| ||||    
T  16904569 agtctcgtcatactcaaacaagtctcaaagaactcatatttcttatatctttgaaattttttataattttggata 16904495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 6432965 - 6433005
Alignment:
Q  224 tgattctttgttgcaatttcgtttaaattttttgatttatt 264  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  6432965 tgattctttgttgcaatttcgttcaaattttttgacttatt 6433005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 314
Target Start/End: Complemental strand, 25032965 - 25032691
Alignment:
Q  32 gtttattttctgtaaactttatatgatattctataatgaa-ttttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacact 130  Q
    |||| |||||||| |||||||||||||||| ||||||||| |||||| |||||| || || || ||||||| ||         ||||||||||||| ||     
T  25032965 gtttgttttctgtgaactttatatgatattgtataatgaacttttttttgactcaatttacttagccttgagca---------ttaagtttaattatacc 25032875  T
Q  131 aatcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagtttatgattct 230  Q
    ||  ||||  |  ||| ||||||||| ||||||||||| || |||| |||||||||| || |||||  | |||| | || |||||||||||||||||||     
T  25032874 aactattatttttaatgcataacaatgaaaaataaagtaaacttttgtttgcaatttgcaaaagaacattaatccttaacgaatatcagtttatgattcc 25032775  T
Q  231 ttgttgcaatttcgtttaaattttttgatttattacatgcggtgttatttgtgcactcttataccaacgattcactactcatga 314  Q
    |||||||||||||||  | ||||||| | | ||| ||| | |||||||||  ||| ||| ||| |||||||||| | |||||||    
T  25032774 ttgttgcaatttcgtgaatatttttttactcattgcatacagtgttatttacgcattctcatatcaacgattcagtgctcatga 25032691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 3404025 - 3404107
Alignment:
Q  108 aagtttttaagtttaattacactaatcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttaca 190  Q
    |||||| |||| |||||||| ||||  ||||  || ||| ||||||||| ||||||||||| ||||||| |||||||||||||    
T  3404025 aagtttctaagcttaattacgctaactattatttataatgcataacaatgaaaaataaagtaaaattttgtttgcaatttaca 3404107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 314
Target Start/End: Complemental strand, 15545339 - 15545049
Alignment:
Q  25 tcactatgtttattttctgtaaactttatatgatattctataatgaa--ttttttgtgactctatatattttgccttgaacacttaagtttttaagttta 122  Q
    ||||||| |||||||| | | |||||||||||||||| |||||| ||  |||||| | |||| |  ||||| |||||| ||||| |||||| |||| |||    
T  15545339 tcactatatttattttatatgaactttatatgatattgtataataaacttttttttttactcaaattatttagccttgtacactcaagtttctaagctta 15545240  T
Q  123 attacactaatcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagttt 222  Q
    ||||||| ||  ||||  |||||| ||| | ||| ||||||||||| || |||| |||| || ||||| |||||| | |||| | ||  ||||| | |||    
T  15545239 attacaccaactattatttagaatgcattaaaatgaaaaataaagtaaagttttgtttgaaacttacaaaagaatattaatcctgaactaatattaattt 15545140  T
Q  223 atgattctttgttgcaatttcgtttaaattttttgatttattacatgcggtgttatttgtgcactcttataccaacgattcactactcatga 314  Q
    ||||||| || |  |||||||| | ||||| ||  | ||||| ||||| |||||||||  ||||||| || |||| |||||| | |||||||    
T  15545139 atgattccttataacaatttcgctcaaattgttgtacttattgcatgcagtgttatttacgcactctcatgccaa-gattcagtgctcatga 15545049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 243
Target Start/End: Complemental strand, 36644922 - 36644710
Alignment:
Q  33 tttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacactaa 132  Q
    |||||||||| ||||||||||||| || | || |||||||||||| | |||| || ||||  |||||||||||| |||||| |||| ||||||||| |||    
T  36644922 tttattttctctaaactttatatgttagtgtaaaatgaatttttt-ttactcaatttattcagccttgaacactcaagtttctaagcttaattacattaa 36644824  T
Q  133 tcattaactaga----atacataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagtttatgatt 228  Q
      |||   ||||    ||| |||||||| ||||||||| | || |||| ||||||||| ||| ||| |  | |||| | ||||||||||| |||||||||    
T  36644823 ctattgtttagaatgcatatataacaatgaaaaataaattaaagttttgtttgcaattgaca-aaggacattaatccttaatgaatatcaatttatgatt 36644725  T
Q  229 ctttgttgcaatttc 243  Q
    | || ||||||||||    
T  36644724 ccttattgcaatttc 36644710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 22516863 - 22516758
Alignment:
Q  141 tagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaatctgaatcatcaatgaatatcagtttatgattctttgttgcaat 240  Q
    |||||| ||||| ||| ||||||||||| || |||| |||||||||  || || ||| | ||||||||| |||||| | |||||||||| || || ||||    
T  22516863 tagaatgcataaaaatgaaaaataaagtaaatttttgtttgcaattatcaaaaaaatattaatcatcaacgaatattaatttatgattcctttttacaat 22516764  T
Q  241 ttcgtt 246  Q
    ||||||    
T  22516763 ttcgtt 22516758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 31585521 - 31585587
Alignment:
Q  131 aatcattaactagaatacataacaattaaaaataaagtgaaattttatt-tgcaatttacataagaa 196  Q
    |||| |||||||||||||||| || | ||||||||||| ||||||| || ||||||||||| |||||    
T  31585521 aatccttaactagaatacatagcattgaaaaataaagtcaaatttttttatgcaatttacacaagaa 31585587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 6528016 - 6527951
Alignment:
Q  3 agtatgccattatatttttcgatcactatgtttattttctgtaaactttatatgatattctataat 68  Q
    ||||||| ||||||||||||| || |||| |||||||| ||||||| |||||| ||||| ||||||    
T  6528016 agtatgctattatatttttcgttctctatatttattttttgtaaacattatattatattgtataat 6527951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 36690177 - 36690339
Alignment:
Q  33 tttattttctgtaaactttatatgatattctataatgaattttttgtgactctatatattttgccttgaacacttaagtttttaagtttaattacactaa 132  Q
    |||||||| ||| ||||||||||||||||  |||||||| ||||| | |||| || || || ||||||| |  | |||||| |||| |||||| ||||||    
T  36690177 tttattttatgtgaactttatatgatattgaataatgaacttttttttactcaatttacttagccttgagccttcaagtttctaagcttaatt-cactaa 36690275  T
Q  133 tcattaactagaatacataacaattaaaaataaagtgaaattttatttgcaatttacataagaa 196  Q
      ||||  |  ||| ||||||||| | ||||||||| || |||| |||| |||||||| |||||    
T  36690276 ctattatttttaatgcataacaatgagaaataaagtaaagttttgtttgaaatttacaaaagaa 36690339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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