View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_21 (Length: 474)

Name: NF17716_low_21
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_21
NF17716_low_21
[»] scaffold0088 (2 HSPs)
scaffold0088 (72-464)||(48093-48485)
scaffold0088 (1-45)||(48048-48092)
[»] chr1 (10 HSPs)
chr1 (1-37)||(34083364-34083400)
chr1 (1-43)||(29798108-29798150)
chr1 (1-34)||(21015989-21016022)
chr1 (1-34)||(35527945-35527978)
chr1 (4-36)||(4859113-4859145)
chr1 (1-37)||(9398411-9398447)
chr1 (1-37)||(9872103-9872139)
chr1 (4-36)||(15670641-15670673)
chr1 (1-33)||(42416830-42416862)
chr1 (7-43)||(43122999-43123035)
[»] chr6 (7 HSPs)
chr6 (1-43)||(35110081-35110123)
chr6 (1-34)||(9333981-9334014)
chr6 (1-33)||(9973245-9973277)
chr6 (1-42)||(10497145-10497186)
chr6 (1-42)||(12808896-12808937)
chr6 (1-34)||(28592688-28592721)
chr6 (1-37)||(33930522-33930558)
[»] chr4 (10 HSPs)
chr4 (1-35)||(1657030-1657064)
chr4 (1-32)||(21266885-21266916)
chr4 (1-32)||(45029608-45029639)
chr4 (335-393)||(49300489-49300546)
chr4 (5-43)||(50112560-50112598)
chr4 (1-35)||(56329563-56329597)
chr4 (1-34)||(34968010-34968043)
chr4 (1-37)||(32923201-32923237)
chr4 (1-33)||(36071171-36071203)
chr4 (1-33)||(54587927-54587959)
[»] chr2 (8 HSPs)
chr2 (1-35)||(2264824-2264858)
chr2 (1-36)||(5028883-5028918)
chr2 (1-36)||(25274828-25274863)
chr2 (1-34)||(17286929-17286962)
chr2 (1-33)||(4238786-4238818)
chr2 (5-33)||(10588647-10588675)
chr2 (1-29)||(35458792-35458820)
chr2 (1-33)||(35727464-35727496)
[»] chr7 (6 HSPs)
chr7 (1-34)||(38553845-38553878)
chr7 (1-36)||(9522939-9522974)
chr7 (1-36)||(22690035-22690070)
chr7 (1-36)||(45151404-45151439)
chr7 (5-43)||(19793552-19793590)
chr7 (5-33)||(40185748-40185776)
[»] chr5 (5 HSPs)
chr5 (1-33)||(23118053-23118085)
chr5 (1-36)||(37073767-37073802)
chr5 (2-35)||(39143742-39143775)
chr5 (1-37)||(1257152-1257188)
chr5 (1-29)||(3052208-3052236)
[»] chr3 (11 HSPs)
chr3 (335-390)||(20623067-20623120)
chr3 (1-37)||(26610491-26610527)
chr3 (1-32)||(48376862-48376893)
chr3 (1-36)||(54230098-54230133)
chr3 (1-35)||(7859492-7859526)
chr3 (1-43)||(35191809-35191851)
chr3 (8-42)||(46586194-46586228)
chr3 (1-43)||(55494716-55494758)
chr3 (4-37)||(55395322-55395355)
chr3 (1-33)||(37887933-37887965)
chr3 (1-33)||(48688141-48688173)
[»] chr8 (3 HSPs)
chr8 (1-32)||(13958838-13958869)
chr8 (1-39)||(7433167-7433205)
chr8 (1-37)||(41625221-41625257)
[»] scaffold0426 (1 HSPs)
scaffold0426 (5-43)||(5832-5870)


Alignment Details
Target: scaffold0088 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 72 - 464
Target Start/End: Original strand, 48093 - 48485
Alignment:
Q  72 gaattgtgtaaaataaatttacactattacaaacataaacaatgtaattaatannnnnnn-cttcccaggcaagaatttaaacgacccacatgtgatagc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||    
T  48093 gaattgtgtaaaataaatttacactattacaaacataaacaatgtaattaatattttttttcttcgcaggcaagaatttaaacgacccacatgtgatagc 48192  T
Q  171 tgatgttggtgatgtccctgtccaagatattcgagattttggagtcaaagatgacagattaacgaagttaattagagactctgtcttgattgtaatggat 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||    
T  48193 tgatgttggtgatgtccctgtccaagatattcgagattttggagtcaaagatgacagattaacgaagttaattagagattctgtcaagattgtgatggat 48292  T
Q  271 caggtatatacattgttaatatttgagacattatatttttaacaattatgttccggtttcctggtgtttttgataaacaaaaatgctagttttaaattaa 370  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  48293 caggtgtatacattgttaatatttgagacattatatttttaacaattatgttcctgtttcctggtgtttttgataaacaaaaatgctagttttaaattta 48392  T
Q  371 ttgtttgtaagatcaaactagaatatgattttatcggaccttaaattcgaatctataatgttttgttaaactttaagagatatcttaccctttg 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48393 ttgtttgtaagatcaaactagaatatgattttatcggaccttaaattcgaatctat-atgttttgttaaactttaagagatatcttaccctttg 48485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48048 - 48092
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccatacacctc 45  Q
    |||||||||||||| ||||| ||| ||| ||||||||||||||||    
T  48048 atgcataatatatgcaaggtctggagttagaaccccatacacctc 48092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34083364 - 34083400
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34083364 atgcataatatatgtaaggtttggggttcgaacccca 34083400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29798150 - 29798108
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  29798150 atgcataatatatgtaaggtctggggttcgaacaccagacacc 29798108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21015989 - 21016022
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacc 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  21015989 atgcataatatatgtaaggttcggggttcgaacc 21016022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35527945 - 35527978
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacc 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  35527945 atgcataatatatataaggtttggggttcgaacc 35527978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 4859113 - 4859145
Alignment:
Q  4 cataatatatgtaaggtttggggttcgaacccc 36  Q
    ||||||||||||||||| |||||||||||||||    
T  4859113 cataatatatgtaaggtctggggttcgaacccc 4859145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9398447 - 9398411
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  9398447 atgcatgatatatgtaaggtctggggttcgaacccca 9398411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9872139 - 9872103
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  9872139 atgcataatatatgcaaggtttgcggttcgaacccca 9872103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 15670673 - 15670641
Alignment:
Q  4 cataatatatgtaaggtttggggttcgaacccc 36  Q
    |||||||||||||||||||||||||| ||||||    
T  15670673 cataatatatgtaaggtttggggttcaaacccc 15670641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42416830 - 42416862
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    |||||||||||||| ||||||||||||||||||    
T  42416830 atgcataatatatgcaaggtttggggttcgaac 42416862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 43122999 - 43123035
Alignment:
Q  7 aatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  43122999 aatatatgcaaggtttcgggttcgaaccccatacacc 43123035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35110081 - 35110123
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  35110081 atgcataatatatgtaaggtttgaggttcgaaccccaaacacc 35110123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9334014 - 9333981
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9334014 atgcataatatatgtaaggtttggggttcgaacc 9333981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9973245 - 9973277
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    |||||||||||||||||||||||||||||||||    
T  9973245 atgcataatatatgtaaggtttggggttcgaac 9973277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10497186 - 10497145
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccatacac 42  Q
    ||||||||||||||||||||||| |||||||| |||| ||||    
T  10497186 atgcataatatatgtaaggtttgcggttcgaatcccagacac 10497145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12808896 - 12808937
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccatacac 42  Q
    |||||||||||||| ||||| |||||||||||||||| ||||    
T  12808896 atgcataatatatgcaaggtctggggttcgaaccccaaacac 12808937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28592721 - 28592688
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacc 34  Q
    |||||||||||||||||||| |||||||||||||    
T  28592721 atgcataatatatgtaaggtctggggttcgaacc 28592688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33930522 - 33930558
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  33930522 atgcataatatatgcaaggtttagggttcgaacccca 33930558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1657064 - 1657030
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1657064 atgcataatatatgtaaggtttggggttcgaaccc 1657030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 21266916 - 21266885
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  21266916 atgcataatatatgtaaggtttggggttcgaa 21266885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 45029639 - 45029608
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  45029639 atgcataatatatgtaaggtttggggttcgaa 45029608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 49300546 - 49300489
Alignment:
Q  335 tgtttttgataaacaaaaatgctagttttaaattaattgtttgtaagatcaaactagaa 393  Q
    ||||||||| |||||| | |||||||||||||||| || |||||| |||||||||||||    
T  49300546 tgtttttgaaaaacaaga-tgctagttttaaattacttatttgtaggatcaaactagaa 49300489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 50112598 - 50112560
Alignment:
Q  5 ataatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  50112598 ataatatatataaggtttggggttcgaaccccaaacacc 50112560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 56329563 - 56329597
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  56329563 atgcataataaatgtaaggtttggggttcgaaccc 56329597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34968043 - 34968010
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  34968043 atgcataatatatgtaaggtttgaggttcgaacc 34968010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32923237 - 32923201
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  32923237 atgcataatatatgtaaggttcggggttcaaacccca 32923201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36071171 - 36071203
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    ||||||||||||||||||||| |||||||||||    
T  36071171 atgcataatatatgtaaggttcggggttcgaac 36071203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 54587927 - 54587959
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    ||||||||||||||||||||||||| |||||||    
T  54587927 atgcataatatatgtaaggtttgggattcgaac 54587959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2264824 - 2264858
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2264824 atgcataatatatgtaaggtttggggttcgaaccc 2264858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5028883 - 5028918
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccc 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  5028883 atgcataatatatgtaaggtttggggttcaaacccc 5028918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25274863 - 25274828
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccc 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  25274863 atgcataatatatgtaaggtctggggttcgaacccc 25274828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17286929 - 17286962
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacc 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  17286929 atgcataatatatttaaggtttggggttcgaacc 17286962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4238786 - 4238818
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    ||||||||||||||||||||| |||||||||||    
T  4238786 atgcataatatatgtaaggttcggggttcgaac 4238818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 10588675 - 10588647
Alignment:
Q  5 ataatatatgtaaggtttggggttcgaac 33  Q
    |||||||||||||||||||||||||||||    
T  10588675 ataatatatgtaaggtttggggttcgaac 10588647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35458820 - 35458792
Alignment:
Q  1 atgcataatatatgtaaggtttggggttc 29  Q
    |||||||||||||||||||||||||||||    
T  35458820 atgcataatatatgtaaggtttggggttc 35458792  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35727464 - 35727496
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    |||||||||||||| ||||||||||||||||||    
T  35727464 atgcataatatatgcaaggtttggggttcgaac 35727496  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38553845 - 38553878
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38553845 atgcataatatatgtaaggtttggggttcgaacc 38553878  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9522939 - 9522974
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccc 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  9522939 atgcataatatatgcaaggtttggggttcgaacccc 9522974  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22690070 - 22690035
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccc 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  22690070 atgcataatatatgcaaggtttggggttcgaacccc 22690035  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45151404 - 45151439
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccc 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  45151404 atgcataatatatgtaaggtttggggttcaaacccc 45151439  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 19793552 - 19793590
Alignment:
Q  5 ataatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  19793552 ataatatatgtaaggtctggggttcgaaccccaaacacc 19793590  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 40185776 - 40185748
Alignment:
Q  5 ataatatatgtaaggtttggggttcgaac 33  Q
    |||||||||||||||||||||||||||||    
T  40185776 ataatatatgtaaggtttggggttcgaac 40185748  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23118085 - 23118053
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    |||||||||||||||||||||||||||||||||    
T  23118085 atgcataatatatgtaaggtttggggttcgaac 23118053  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37073802 - 37073767
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccc 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37073802 atgcataatatatgtaaggttcggggttcgaacccc 37073767  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 39143742 - 39143775
Alignment:
Q  2 tgcataatatatgtaaggtttggggttcgaaccc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  39143742 tgcataatatatgtaaggtttgaggttcgaaccc 39143775  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1257188 - 1257152
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  1257188 atgcataaaatatgtaaggtctggggttcgaacccca 1257152  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3052208 - 3052236
Alignment:
Q  1 atgcataatatatgtaaggtttggggttc 29  Q
    |||||||||||||||||||||||||||||    
T  3052208 atgcataatatatgtaaggtttggggttc 3052236  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 20623067 - 20623120
Alignment:
Q  335 tgtttttgataaacaaaaatgctagttttaaattaattgtttgtaagatcaaacta 390  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||| ||||||||||    
T  20623067 tgtttttggtaaacaaacat--tagttttaaattaattgtttgtaggatcaaacta 20623120  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26610527 - 26610491
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  26610527 atgcataatatatgtaaggtatggggttcgaacccca 26610491  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48376862 - 48376893
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  48376862 atgcataatatatgtaaggtttggggttcgaa 48376893  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54230133 - 54230098
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccc 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  54230133 atgcataatatatgcaaggtttggggttcgaacccc 54230098  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7859526 - 7859492
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccc 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  7859526 atgcataatatatgtaaggttcggggttcgaaccc 7859492  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35191851 - 35191809
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    |||||||||||||| ||||| |||||||||||||||| |||||    
T  35191851 atgcataatatatgcaaggtctggggttcgaaccccagacacc 35191809  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 46586228 - 46586194
Alignment:
Q  8 atatatgtaaggtttggggttcgaaccccatacac 42  Q
    |||||||||||||||||||||||||||||| ||||    
T  46586228 atatatgtaaggtttggggttcgaaccccagacac 46586194  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 55494716 - 55494758
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    |||||||||||||||||||  ||||||||||||| ||||||||    
T  55494716 atgcataatatatgtaaggactggggttcgaacctcatacacc 55494758  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 55395355 - 55395322
Alignment:
Q  4 cataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||||||||||||||||||||||| |||||||    
T  55395355 cataatatatgtaaggtttggggttcaaacccca 55395322  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37887965 - 37887933
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    ||||||||||||||||||||||||| |||||||    
T  37887965 atgcataatatatgtaaggtttgggattcgaac 37887933  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48688141 - 48688173
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaac 33  Q
    ||||||||||||||||||||||| |||||||||    
T  48688141 atgcataatatatgtaaggtttgaggttcgaac 48688173  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 13958838 - 13958869
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  13958838 atgcataatatatgtaaggtttggggttcgaa 13958869  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7433167 - 7433205
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaaccccata 39  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  7433167 atgcataatatatgtaaggtctgggattcgaaccccata 7433205  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41625221 - 41625257
Alignment:
Q  1 atgcataatatatgtaaggtttggggttcgaacccca 37  Q
    |||||||||||||||||||| | ||||||||||||||    
T  41625221 atgcataatatatgtaaggtctagggttcgaacccca 41625257  T

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Target: scaffold0426 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 5870 - 5832
Alignment:
Q  5 ataatatatgtaaggtttggggttcgaaccccatacacc 43  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  5870 ataatatatgtaaggtctggggttcgaaccccagacacc 5832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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