View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_23 (Length: 467)
Name: NF17716_low_23
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 34253579 - 34254033
Alignment:
| Q |
1 |
tctaagtggtctcaaattttgttcaaagacatcataacattggcagcccttttcctatgcaacatcatattagcctttacaactgaccaccaacaagagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253579 |
tctaagtggtctcaaattttgttcaaagacatcataacattggcagcccttttcctatgcaacatcatattagcctttacaactgaccaccaacaagagc |
34253678 |
T |
|
| Q |
101 |
aagacaggattggaacagcactcccgggtcaaaacttcaacatcaactttgaacactattctggttatattacagttaacaaggatgatggtaggacact |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34253679 |
aagacaggattggaacagcactcccaggtcaaaacttcaacatcaactttgaacactattctggttatattacagttaacaaggatgttggtaggacact |
34253778 |
T |
|
| Q |
201 |
attttactggttcattgaagcagatcatatagatcctacttcaaaacctcttcttttatggttcaatggtggtcctggttgttcatctattgcttatggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253779 |
attttactggttcattgaagcagatcatatagatcctacttcaaaacctcttcttttatggttcaatggtggtcctggttgttcatctattgcttatggt |
34253878 |
T |
|
| Q |
301 |
gaggctgaggaaattggtccttttcatattaattcagatggcaatacccttcatcttaatccttattcatggaatcaaggtgagtggttttttgtttaac |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34253879 |
gaggctgaggaaattggtccttttcatattaattcagatggcaatacccttcatcttaatccttattcatggaatcaaggtgagtggttttgtgtttaac |
34253978 |
T |
|
| Q |
401 |
cattcaaaaaatgtatgctatgaactattgtgtgttacatcattttcatttcgat |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253979 |
cattcaaaaaatgtatgctatgaactattgtgtgttacatcattttcatttcgat |
34254033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 90 - 385
Target Start/End: Original strand, 26633640 - 26633935
Alignment:
| Q |
90 |
ccaacaagagcaagacaggattggaacagcactcccgggtcaaaacttcaacatcaactttgaacactattctggttatattacagttaacaaggatgat |
189 |
Q |
| |
|
||||||||| || |||||||||| | | ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||||| | |
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| T |
26633640 |
ccaacaagaacatgacaggattgatagaccactcccaggtcaaaacttcaacatcagctttgaacactattctggttatataacagtgaatgaggatgct |
26633739 |
T |
|
| Q |
190 |
ggtaggacactattttactggttcattgaagcagatcatatagatcctacttcaaaacctcttcttttatggttcaatggtggtcctggttgttcatcta |
289 |
Q |
| |
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||||||| | ||||||||||||||| |||| |||||| |||||||||||||||| || |||||||| ||| |||||||||||||||||||||| |||| |
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| T |
26633740 |
ggtaggaacttgttttactggttcattcaagctgatcatgtagatcctacttcaaagccacttcttttgtggctcaatggtggtcctggttgttcttcta |
26633839 |
T |
|
| Q |
290 |
ttgcttatggtgaggctgaggaaattggtccttttcatattaattcagatggcaatacccttcatcttaatccttattcatggaatcaaggtgagt |
385 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||| |
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| T |
26633840 |
ttgcttatggtgaagctgaggaaattggtccttttcatattaattcagatggcaaaaaccttcattttaatccttattattggaatcaaggtgagt |
26633935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 117 - 383
Target Start/End: Original strand, 26641132 - 26641398
Alignment:
| Q |
117 |
agcactcccgggtcaaaacttcaacatcaactttgaacactattctggttatattacagttaacaaggatgatggtaggacactattttactggttcatt |
216 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||| || |||||| |||||||| | ||||||||||||||| |
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| T |
26641132 |
agcacttccaggtcaaaacttcaacatcagctttgaacattactctggttatataacagtgaatgaggatgttggtaggaacttgttttactggttcatt |
26641231 |
T |
|
| Q |
217 |
gaagcagatcatatagatcctacttcaaaacctcttcttttatggttcaatggtggtcctggttgttcatctattgcttatggtgaggctgaggaaattg |
316 |
Q |
| |
|
|||| |||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
26641232 |
caagctgatcatgtagatcctacttctaagccacttcttttgtggttcaatggtggtcctggttgttcttctattgcttatggtgaagctgaggaaattg |
26641331 |
T |
|
| Q |
317 |
gtccttttcatattaattcagatggcaatacccttcatcttaatccttattcatggaatcaaggtga |
383 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||| |
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| T |
26641332 |
gtccttttcatattaattcagatggcaaaaaccttcattttaatccttattcttggaatcaaggtga |
26641398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 90 - 417
Target Start/End: Original strand, 26626079 - 26626412
Alignment:
| Q |
90 |
ccaacaagagcaagacaggattggaacagcactcccgggtcaaaacttcaacatcaactttgaacactattctggttatattacagttaacaaggatgat |
189 |
Q |
| |
|
||||||||| ||||||||||||| | | ||||||| ||||||||||||||||||| ||||||||| || ||||||||||| ||||| || |||||| | |
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| T |
26626079 |
ccaacaagaacaagacaggattgatagaccactcccaggtcaaaacttcaacatcagctttgaacattactctggttatataacagtgaatgaggatgct |
26626178 |
T |
|
| Q |
190 |
ggtaggacactattttactggttcattgaagcagatcatatagatcctacttcaaaacctcttcttttatggttcaatggtggtcctggttgttcatcta |
289 |
Q |
| |
|
||||||| | ||||||||||||||| |||| |||||| ||||||||||||||| || |||||||| ||| |||||||||||||||||||||| |||| |
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|
| T |
26626179 |
ggtaggaacttgttttactggttcattcaagctgatcatgtagatcctacttcaatgccacttcttttgtggctcaatggtggtcctggttgttcttcta |
26626278 |
T |
|
| Q |
290 |
ttgcttatggtgaggctgaggaaattggtccttttcatattaattcagatggcaatacccttcatcttaatccttattcatggaatcaaggt------ga |
383 |
Q |
| |
|
|||||| |||||| ||||| |||||||| ||||||||||||||||| ||| ||| ||||| |||||||||| ||||| |||||||||||| || |
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| T |
26626279 |
ttgcttttggtgaagctgaagaaattggcccttttcatattaattctgattccaaaaccctctatcttaatccatattcttggaatcaaggtgatttaga |
26626378 |
T |
|
| Q |
384 |
gtggttttttgtttaaccattcaaaaaatgtatg |
417 |
Q |
| |
|
||| || ||||||||||| ||| ||||||||||| |
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| T |
26626379 |
gtgattctttgtttaacctttccaaaaatgtatg |
26626412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26641022 - 26641086
Alignment:
| Q |
1 |
tctaagtggtctcaaattttgttcaaagacatcataacattggcagcccttttcctatgcaacat |
65 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||| ||||| |
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|
| T |
26641022 |
tctaagtggtctcaaattttgttcattgtcatcataacattggcaaaccttttccaatgtaacat |
26641086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 42981900 - 42981823
Alignment:
| Q |
254 |
ttttatggttcaatggtggtcctggttgttcatctattgcttatggtgaggctgaggaaattggtccttttcatatta |
331 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||| |
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|
| T |
42981900 |
ttttatggcttaatggtggtcctggttgttcttctattgcttatggtgcttctgaagaaattggtccttttcgtatta |
42981823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 42976003 - 42975932
Alignment:
| Q |
254 |
ttttatggttcaatggtggtcctggttgttcatctattgcttatggtgaggctgaggaaattggtccttttc |
325 |
Q |
| |
|
|||||||| | |||||||||||||||||||| || ||||||||||||| | || |||||||||||||||| |
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|
| T |
42976003 |
ttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
42975932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 45130119 - 45130067
Alignment:
| Q |
232 |
gatcctacttcaaaacctcttcttttatggttcaatggtggtcctggttgttc |
284 |
Q |
| |
|
|||||| |||||||||||||| || | ||| |||||||||| ||||||||||| |
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|
| T |
45130119 |
gatccttcttcaaaacctcttgttctttggctcaatggtggacctggttgttc |
45130067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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