View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_25 (Length: 466)
Name: NF17716_low_25
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 98 - 448
Target Start/End: Original strand, 26764386 - 26764736
Alignment:
| Q |
98 |
caaaatcctcaatttatacctcttagcacgtttgttgttatttgcgctagttatatgtgggaatgagcaattttgattgggaaagcaattttctaaccta |
197 |
Q |
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| T |
26764386 |
caaaatcctcaatttatacctcttaacacgtttgttgttattttcgctagttatatgtgagaatgagcaattttgattgggaaagcaattttctaaccta |
26764485 |
T |
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| Q |
198 |
acagtaaaggaaaatcctaactatcagtttcttataaccgtcattcaaatttgaacgaacaaaacccacgtgtcatttatctatttgttaccaaacctta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764486 |
acagtaaaggaaaatcctaactatcagtttcttataaccgtcattcaaatttgaacgaacaaaacccacgtgtcatttatctatttgttaccaaacctta |
26764585 |
T |
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| Q |
298 |
cctctctcctaagtaatcgatagcgcgtactcaattcaatcttaatcnnnnnnnnnnnnnnnaattccttacgtaccgcaagtgcaacctctatataata |
397 |
Q |
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| T |
26764586 |
cctctctcctaagtaatcgatagcgcgtactcaattcaatcttaatcttttttactttttttaattccttacgtaccgcaagtgcaacctctatataata |
26764685 |
T |
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| Q |
398 |
gaaactcacacctttccttattctattctgcgattttctatatcctatcct |
448 |
Q |
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| T |
26764686 |
gaaactcacacctttccttattctattctgcgattttctatatcctatcct |
26764736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 26764210 - 26764304
Alignment:
| Q |
5 |
cgagatggtaaatatatagaggggtaatctagtgtatgtagtgtataataggatatgtggacttgattgatctgattgttgtttatagtggtcca |
99 |
Q |
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| T |
26764210 |
cgagatagtaaatatatagaggggtaatctagtgtatgtagtgtataataggatatgttaacttgattaatctaattgttgtttatagtggtcca |
26764304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 32138743 - 32138813
Alignment:
| Q |
7 |
agatggtaaatatatagaggggtaatctagtgtatgtagtgtataataggatatgtggacttgattgatct |
77 |
Q |
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| T |
32138743 |
agatggtaaatatatagaggggtaatctagtatatatagtgtagaataggatatgtgaacttgattaatct |
32138813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 48136036 - 48135969
Alignment:
| Q |
10 |
tggtaaatatatagaggggtaatctagtgtatgtagtgtataataggatatgtggacttgattgatct |
77 |
Q |
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| T |
48136036 |
tggtaaatatatagagggataatctaatatatgtaatgtagaataggatatgtggacttgattaatct |
48135969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 19763569 - 19763506
Alignment:
| Q |
9 |
atggtaaatatatagaggggtaatctagtgtatgtagtgtataataggatatgtggacttgatt |
72 |
Q |
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| T |
19763569 |
atggtaaatatatagagcgataatctagtatatgtagtgtagaatatgatatgtggacttgatt |
19763506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 20776126 - 20776081
Alignment:
| Q |
32 |
tctagtgtatgtagtgtataataggatatgtggacttgattgatct |
77 |
Q |
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| T |
20776126 |
tctagtatatgtagtgtagaatagaatatgtggacttgattaatct |
20776081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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