View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_32 (Length: 432)

Name: NF17716_low_32
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_32
NF17716_low_32
[»] scaffold0170 (1 HSPs)
scaffold0170 (198-415)||(10558-10771)
[»] scaffold0200 (1 HSPs)
scaffold0200 (91-197)||(26952-27058)
[»] chr7 (15 HSPs)
chr7 (91-197)||(23362308-23362414)
chr7 (91-197)||(25611377-25611483)
chr7 (91-197)||(4595044-4595150)
chr7 (91-197)||(3962308-3962414)
chr7 (91-197)||(14160483-14160589)
chr7 (92-197)||(9360761-9360866)
chr7 (91-191)||(6596171-6596271)
chr7 (91-186)||(5866247-5866342)
chr7 (91-196)||(9026584-9026686)
chr7 (103-197)||(30466687-30466781)
chr7 (91-177)||(40187398-40187484)
chr7 (87-191)||(8150865-8150969)
chr7 (114-197)||(28423916-28423999)
chr7 (114-191)||(35827592-35827669)
chr7 (114-198)||(42851983-42852067)
[»] chr6 (9 HSPs)
chr6 (91-197)||(32957457-32957563)
chr6 (93-191)||(7597585-7597683)
chr6 (91-196)||(7435630-7435735)
chr6 (91-190)||(34183135-34183234)
chr6 (91-197)||(7608497-7608603)
chr6 (91-185)||(6192574-6192668)
chr6 (91-154)||(12523652-12523715)
chr6 (91-157)||(31797990-31798056)
chr6 (91-144)||(29025250-29025303)
[»] chr4 (16 HSPs)
chr4 (91-197)||(26429206-26429312)
chr4 (91-197)||(33846327-33846433)
chr4 (91-197)||(26006099-26006205)
chr4 (91-196)||(35853179-35853284)
chr4 (91-191)||(54552630-54552730)
chr4 (92-197)||(17423837-17423942)
chr4 (91-197)||(52759141-52759247)
chr4 (92-197)||(48446665-48446770)
chr4 (91-197)||(2536993-2537099)
chr4 (91-169)||(9034932-9035010)
chr4 (91-197)||(22359255-22359361)
chr4 (109-188)||(23860024-23860103)
chr4 (91-197)||(12274199-12274305)
chr4 (91-191)||(19396180-19396280)
chr4 (92-197)||(25058319-25058424)
chr4 (94-197)||(8169341-8169444)
[»] chr2 (13 HSPs)
chr2 (91-190)||(22605944-22606043)
chr2 (91-197)||(10213837-10213943)
chr2 (91-197)||(24477490-24477596)
chr2 (91-197)||(45085999-45086105)
chr2 (91-197)||(38451707-38451812)
chr2 (91-186)||(11616661-11616756)
chr2 (92-191)||(31411380-31411479)
chr2 (91-197)||(23769789-23769895)
chr2 (114-197)||(40074067-40074149)
chr2 (103-169)||(28317799-28317865)
chr2 (91-191)||(23407763-23407863)
chr2 (91-137)||(20214282-20214328)
chr2 (114-191)||(32025545-32025622)
[»] chr8 (8 HSPs)
chr8 (91-197)||(11503083-11503189)
chr8 (91-197)||(25663524-25663630)
chr8 (91-197)||(5839784-5839890)
chr8 (91-197)||(32282857-32282963)
chr8 (91-179)||(32578088-32578176)
chr8 (91-191)||(36531161-36531261)
chr8 (103-196)||(40395259-40395352)
chr8 (103-197)||(10342381-10342478)
[»] scaffold0279 (1 HSPs)
scaffold0279 (91-196)||(6733-6838)
[»] chr3 (11 HSPs)
chr3 (91-191)||(8457922-8458022)
chr3 (91-188)||(51951964-51952061)
chr3 (91-197)||(43018369-43018475)
chr3 (91-197)||(51191886-51191992)
chr3 (91-197)||(55218660-55218766)
chr3 (91-196)||(39383472-39383577)
chr3 (97-197)||(39133677-39133777)
chr3 (92-180)||(21689773-21689861)
chr3 (91-197)||(26400195-26400301)
chr3 (91-188)||(7622664-7622760)
chr3 (114-196)||(13444138-13444220)
[»] scaffold0577 (1 HSPs)
scaffold0577 (91-197)||(2213-2319)
[»] scaffold0016 (1 HSPs)
scaffold0016 (91-197)||(187145-187251)
[»] chr5 (7 HSPs)
chr5 (91-197)||(30796812-30796918)
chr5 (91-197)||(9609516-9609622)
chr5 (91-191)||(29242122-29242222)
chr5 (91-191)||(36978729-36978832)
chr5 (91-197)||(1721990-1722096)
chr5 (91-191)||(39860951-39861051)
chr5 (114-155)||(27452532-27452573)
[»] chr1 (4 HSPs)
chr1 (91-196)||(48522184-48522289)
chr1 (91-158)||(15393517-15393584)
chr1 (92-191)||(26347367-26347466)
chr1 (91-144)||(19956605-19956658)
[»] scaffold0450 (1 HSPs)
scaffold0450 (91-197)||(5310-5416)
[»] scaffold0011 (1 HSPs)
scaffold0011 (91-197)||(58419-58525)
[»] scaffold0004 (1 HSPs)
scaffold0004 (103-197)||(216481-216575)
[»] scaffold0360 (1 HSPs)
scaffold0360 (91-163)||(5326-5398)
[»] scaffold0201 (1 HSPs)
scaffold0201 (91-143)||(20703-20755)


Alignment Details
Target: scaffold0170 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 198 - 415
Target Start/End: Complemental strand, 10771 - 10558
Alignment:
Q  198 acaagccaactccttatcatctagaccaaacatctttcacaataaataaatcattaaatcaatgtctgannnnnnnn---agatgatgaccaaatattca 294  Q
    |||||||||||| ||||||  || |||||||||| ||||||||||||||||||||||||||||||||||           ||| |||||||||| |||||    
T  10771 acaagccaactc-ttatcaattaaaccaaacatccttcacaataaataaatcattaaatcaatgtctgattattttttttagacgatgaccaaagattca 10673  T
Q  295 ataccctccacgtgtgtcctgcatgtcacacatgtcatgtccctcaagttatgattatcctctttggctatgcctattccaaccttcacttcaacttcaa 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||| ||||||||||||||||    
T  10672 ataccctccacgtgtgtcctgcatgtcacacatgtcatgtccctcaagttatgattatcctctttgg------ctattccaactttcacttcaacttcaa 10579  T
Q  395 tattttaactccctaatttcc 415  Q
    |||||||||||||||||||||    
T  10578 tattttaactccctaatttcc 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 26952 - 27058
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| || | |||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  26952 catttcattcataataatagcagagatacaagatgaaattctaatatgaatatgaaaactagcatgacgcaaagccactctagcaaagctatgagcgact 27051  T
Q  191 tagttgg 197  Q
    | |||||    
T  27052 tcgttgg 27058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 23362414 - 23362308
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  23362414 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 23362315  T
Q  191 tagttgg 197  Q
    | |||||    
T  23362314 ttgttgg 23362308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 25611377 - 25611483
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  25611377 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 25611476  T
Q  191 tagttgg 197  Q
    | |||||    
T  25611477 tcgttgg 25611483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 4595044 - 4595150
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||||| ||||||||||||    
T  4595044 catttcattcataataatagtagagatacaagatgaaatcctaatatgaatatggaaactagcatgacagaaaaccactctagcaaaactatgagcgact 4595143  T
Q  191 tagttgg 197  Q
    | |||||    
T  4595144 tcgttgg 4595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 3962308 - 3962414
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||| |||    
T  3962308 catttcattcaaaataatagtagagatacaagatggaatcctaatacgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcaact 3962407  T
Q  191 tagttgg 197  Q
    | |||||    
T  3962408 tcgttgg 3962414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 14160589 - 14160483
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||| | |||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||    
T  14160589 catttcattcaaaataatagtagagatacaagaaggaatcctaatatgaatacgcaaactagcatgacgcaaagccactctagcaaagctatgagcgact 14160490  T
Q  191 tagttgg 197  Q
    | |||||    
T  14160489 tcgttgg 14160483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 9360866 - 9360761
Alignment:
Q  92 atttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    |||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||| ||||||    
T  9360866 atttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaaactactctagcaaaactatgatcgactt 9360767  T
Q  192 agttgg 197  Q
     |||||    
T  9360766 cgttgg 9360761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 6596271 - 6596171
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| | |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||||| ||||    
T  6596271 catttcattcaaaataatagtagatatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaaaccactctaacaaaactatgagtgact 6596172  T
Q  191 t 191  Q
    |    
T  6596171 t 6596171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 5866342 - 5866247
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagc 186  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||| |||||| | || ||||||||| ||||||||||||    
T  5866342 catttcattcataataatagtagagatacaagatgaaatcctaatatgaatatggaaattaacatgacacgaagccactctaggaaagctatgagc 5866247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 9026686 - 9026584
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| ||   |||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  9026686 catttcattcataataatag---agatacaagatggaatcttaatatgaatatggaaattagcatgacgcaaatccactctagcaaaactatgagcgact 9026590  T
Q  191 tagttg 196  Q
    | ||||    
T  9026589 tcgttg 9026584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 30466781 - 30466687
Alignment:
Q  103 aataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttgg 197  Q
    ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||| ||||||| ||||||||||||| ||||||||||||| |||||    
T  30466781 aataatagtagagatacaagatggaatcctaatatgaatatggaaactagcataacgcaaagccactctagcaaaactatgagcgacttcgttgg 30466687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 40187484 - 40187398
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaa 177  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  40187484 catttcattcataataatagtagagatacaagatggaatcctaatatgaatatgaaaactagcaagacgcaaaaccactctaacaaa 40187398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 8150865 - 8150969
Alignment:
Q  87 attacatttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagc 186  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||| || ||| ||| ||||||||||  ||| |||||||| ||||||||    
T  8150865 attacatttcattcataataatagtagagatacaagatggaatcctaatatgaatttggaaactagtatgacgcaaagtcacgctagcaaaactatgagc 8150964  T
Q  187 gactt 191  Q
    |||||    
T  8150965 gactt 8150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 28423916 - 28423999
Alignment:
Q  114 agatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttgg 197  Q
    |||||||||||| ||| || ||||||||||| ||| |||||||| ||||| |||||||||| |||||||||||||||| |||||    
T  28423916 agatacaagatggaattctgatatgaatatggaaactagcatgatgcaaagccactctagcgaagctatgagcgacttcgttgg 28423999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 35827669 - 35827592
Alignment:
Q  114 agatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||   || ||| |||||||||||||||||| ||||    
T  35827669 agatacaagatgaaatcttaatatgaatatggaaattagcatgacatgaatccattctagcaaagctatgagcaactt 35827592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 42852067 - 42851983
Alignment:
Q  114 agatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttgga 198  Q
    ||||| |||||| |||||||||||||||||| ||| || ||||||||||| ||||  ||||||| ||||||||||||| ||||||    
T  42852067 agatataagatggaatcctaatatgaatatggaaactaacatgacgcaaagccacgttagcaaaactatgagcgacttcgttgga 42851983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 32957563 - 32957457
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  32957563 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 32957464  T
Q  191 tagttgg 197  Q
    | |||||    
T  32957463 tcgttgg 32957457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 7597683 - 7597585
Alignment:
Q  93 tttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    ||||||||| ||||| |||| ||||| |||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  7597683 tttcattcataataagagtagagatataagatggaatcctaatatgaatatgaaaactagcatcacgcaaagccactctagcaaagctatgagcgactt 7597585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 7435630 - 7435735
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    |||||| |||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||    
T  7435630 catttcgttcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagctattagcgact 7435729  T
Q  191 tagttg 196  Q
    | ||||    
T  7435730 tcgttg 7435735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 34183135 - 34183234
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||| ||||| ||||  |||| |||||||||||||||||| ||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  34183135 catttaattcataatagtagtagagatacaagatgaaatcccaatataaatatgaaaactaacatgacgcaaagccactctagcaaagctatgagcgact 34183234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 7608603 - 7608497
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||  ||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||| ||||    
T  7608603 catttcattcataataatagtagagatacaagatggaattataatatgaatatggaaactagcatgacgcaaagccactatagcaaagctatgagtgact 7608504  T
Q  191 tagttgg 197  Q
    | |||||    
T  7608503 tcgttgg 7608497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 6192668 - 6192574
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgag 185  Q
    |||||||||||  |||| |||| | |||||||||| |||||||||||||||||| ||| |||||| ||| | | |||||||||||||| ||||||    
T  6192668 catttcattcatgataatagtagaaatacaagatggaatcctaatatgaatatggaaactagcataacgtagagccactctagcaaagatatgag 6192574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 12523715 - 12523652
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagca 154  Q
    ||||||||||| |||||  ||| ||||||||||||||||||||||||||||||| ||| |||||    
T  12523715 catttcattcataataatggtagagatacaagatgaaatcctaatatgaatatggaaactagca 12523652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 31797990 - 31798056
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatga 157  Q
    ||||| ||||| ||||| || | ||||||||||||||||||||||||  ||||||||| ||| ||||    
T  31797990 cattttattcataataatagcagagatacaagatgaaatcctaatatagatatgaaaactagaatga 31798056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 29025250 - 29025303
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatg 144  Q
    ||||||||||| ||||| ||||  |||||||||||||||| ||||| |||||||    
T  29025250 catttcattcataataatagtagtgatacaagatgaaatcttaatacgaatatg 29025303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 26429206 - 26429312
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  26429206 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 26429305  T
Q  191 tagttgg 197  Q
    | |||||    
T  26429306 ttgttgg 26429312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 33846433 - 33846327
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||||||||| |||| | |||||||||| ||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  33846433 catttcattcagaataatagtagaaatacaagatggaatcctaatgtgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 33846334  T
Q  191 tagttgg 197  Q
    | |||||    
T  33846333 tcgttgg 33846327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 26006099 - 26006205
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||| |||||| ||||||||||||    
T  26006099 catttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactcaagcaaaactatgagcgact 26006198  T
Q  191 tagttgg 197  Q
    | |||||    
T  26006199 tcgttgg 26006205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 35853284 - 35853179
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||| ||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||    
T  35853284 catttaattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaaactatgagcgact 35853185  T
Q  191 tagttg 196  Q
    | ||||    
T  35853184 tcgttg 35853179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 54552730 - 54552630
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| || |||||||||||| | |||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||| |||||    
T  54552730 catttcattcataataatagcaaagatacaagaaggaatcctgatatgaatatgaaatctagcatgacgcaaagccactctagcaaagctatgaccgact 54552631  T
Q  191 t 191  Q
    |    
T  54552630 t 54552630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 17423837 - 17423942
Alignment:
Q  92 atttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    ||||||||||  |||| |||| |||||||||||| |||||||||||||||||| ||| ||||||||| | || |||||||||||||||||||||| ||||    
T  17423837 atttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgactcgaagccactctagcaaagctatgagcaactt 17423936  T
Q  192 agttgg 197  Q
     |||||    
T  17423937 cgttgg 17423942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 52759141 - 52759247
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| ||||||| |||| |||| ||||||||||||| ||| ||||||||| |||| |||||||| |||| ||||||||||||    
T  52759141 catttcattcataataatagtatagatacacgatggaatcataatatgaatatggaaactagcatgacacaaagccactctaacaaaactatgagcgact 52759240  T
Q  191 tagttgg 197  Q
    | |||||    
T  52759241 tcgttgg 52759247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 48446770 - 48446665
Alignment:
Q  92 atttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    |||||||||| ||||| |||| ||||| |||||| || | ||||||||||||| ||| ||||||||||||||  ||||||||||||||||||||| ||||    
T  48446770 atttcattcataataatagtagagatataagatggaaccataatatgaatatggaaactagcatgacgcaaagtcactctagcaaagctatgagcaactt 48446671  T
Q  192 agttgg 197  Q
     |||||    
T  48446670 cgttgg 48446665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 2536993 - 2537099
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||| ||||| ||||| |||| |||||||||||| |||||||| ||||||||| ||| ||||||||||||||  ||||||||||||| ||| || ||||    
T  2536993 cattttattcataataatagtagagatacaagatggaatcctaacatgaatatggaaactagcatgacgcaaagtcactctagcaaagttataagagact 2537092  T
Q  191 tagttgg 197  Q
    | |||||    
T  2537093 tcgttgg 2537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 9035010 - 9034932
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccact 169  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||    
T  9035010 catttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccact 9034932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 22359255 - 22359361
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||| ||| ||||||||| |||| |||||  |||||| ||||||| ||||    
T  22359255 catttcattcataataatagtagagatacaagatggaatcttaatatgaatatggaaactagcatgacacaaagccactaaagcaaaactatgagtgact 22359354  T
Q  191 tagttgg 197  Q
    | |||||    
T  22359355 tcgttgg 22359361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 23860024 - 23860103
Alignment:
Q  109 agtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcga 188  Q
    |||| |||||| |||||||||| ||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||||    
T  23860024 agtagagatacgagatgaaatcgtaatatgaatatgaaaattattatgatgcaaaatcactctagtaaagctatgagcga 23860103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 12274305 - 12274199
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| ||||||||||| |||||  ||| || |||||| ||||   ||||||||||||||| ||||||||    
T  12274305 catttcattcataataatagtagagatacaagatggaatcctaatataaatatagaaactaacatgacacaaagttactctagcaaagctaagagcgact 12274206  T
Q  191 tagttgg 197  Q
    | |||||    
T  12274205 tcgttgg 12274199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 19396180 - 19396280
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||  |||| |||||||||| |||||| ||| |||||||||| ||||  ||||||| |||| |||||||    
T  19396180 catttcattcataataatagtagagatacaagatacaatcttaatatgaatgtgaaaactagtatgacgcaaagccaccatagcaaaactataagcgact 19396279  T
Q  191 t 191  Q
    |    
T  19396280 t 19396280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 25058319 - 25058424
Alignment:
Q  92 atttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    |||| ||||| ||||| |||| |||||||||||  |||| ||||||||||||| ||| || |||||||| || ||| |||| |||| |||||||||||||    
T  25058319 attttattcataataatagtagagatacaagattgaatcttaatatgaatatggaaactaacatgacgcgaagccagtctaacaaaactatgagcgactt 25058418  T
Q  192 agttgg 197  Q
     |||||    
T  25058419 cgttgg 25058424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 8169341 - 8169444
Alignment:
Q  94 ttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttag 193  Q
    |||||||| ||||| |||| ||||| ||| || ||| ||||||||||||   ||| ||||||||||| || |||  |||||||||||||||||||||| |    
T  8169341 ttcattcataataatagtagagatataaggtggaattctaatatgaataatgaaactagcatgacgcgaagccatcctagcaaagctatgagcgacttcg 8169440  T
Q  194 ttgg 197  Q
    ||||    
T  8169441 ttgg 8169444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 22606043 - 22605944
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| |||||  ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  22606043 catttcattcataataattgtagagatacaagatggaatcctaatatgaatatgaaaactagcatgacgcaaaaccactctcgcaaagctatgagcgact 22605944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 10213943 - 10213837
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| || |||| |||||||| ||||||||||||    
T  10213943 catttcattcataataatagtagagatacaagatgaaatcttaatatgaatatggaaactagcatgacgcgaagccaccctagcaaaactatgagcgact 10213844  T
Q  191 tagttgg 197  Q
    | |||||    
T  10213843 tcgttgg 10213837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 24477490 - 24477596
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    |||||||||||  |||| |||| ||||| |||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  24477490 catttcattcatcataatagtagagatataagatggaatcctaatatgaatatgaaaactagcataacgcaaagccactctagcaaaactatgagcgact 24477589  T
Q  191 tagttgg 197  Q
    | |||||    
T  24477590 tcgttgg 24477596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 45085999 - 45086105
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| ||||| |||||| |||||||||||||||||| ||| ||||||||||| || |||||||||| |||||||||||||||    
T  45085999 catttcattcataataatagtagagatataagatggaatcctaatatgaatatggaaactagcatgacgcgaagccactctagccaagctatgagcgact 45086098  T
Q  191 tagttgg 197  Q
    | |||||    
T  45086099 ttgttgg 45086105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 38451707 - 38451812
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||| ||| |||||||  ||||| |||||||||||||||||||||||| |    
T  38451707 catttcattcataataatagtaa-gatacaagatgaaattctaatatgaatatggaaactagcatggtgcaaagccactctagcaaagctatgagcgatt 38451805  T
Q  191 tagttgg 197  Q
    | |||||    
T  38451806 tcgttgg 38451812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 11616756 - 11616661
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagc 186  Q
    ||||||||||| ||||| |||| |||||||||||  |||||||||||||||||| ||| |||||||||| |||  |||||||||||||||||||||    
T  11616756 catttcattcaaaataatagtagagatacaagatagaatcctaatatgaatatggaaactagcatgacgtaaagtcactctagcaaagctatgagc 11616661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 31411380 - 31411479
Alignment:
Q  92 atttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    |||||||||| ||||| | || | ||||||||||||||||||||||||||||| ||| ||| ||||| ||||  ||||||||||||||||||| ||||||    
T  31411380 atttcattcataataataatagatatacaagatgaaatcctaatatgaatatggaaactagaatgacacaaagtcactctagcaaagctatgaacgactt 31411479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 23769789 - 23769895
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||  ||| |||||||||||||| ||| |||||||   |||| | ||||||||||||||||||||||||    
T  23769789 catttcattcataataatagtagagatacaagatagaattctaatatgaatatggaaactagcatgtaacaaagctactctagcaaagctatgagcgact 23769888  T
Q  191 tagttgg 197  Q
    | |||||    
T  23769889 tcgttgg 23769895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 40074067 - 40074149
Alignment:
Q  114 agatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttgg 197  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||| || ||| | ||||||| ||||||||||||| |||||    
T  40074067 agatacaagatggaatcttaatatgaatatgaaaactagcatgacgcgaagcca-tttagcaaaactatgagcgactttgttgg 40074149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 28317865 - 28317799
Alignment:
Q  103 aataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccact 169  Q
    ||||| |||| ||||| ||||||||||| |||||| ||||||||||||| |||||| ||||||||||    
T  28317865 aataatagtagagatataagatgaaatcttaatataaatatgaaaattatcatgacacaaaaccact 28317799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 23407763 - 23407863
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    |||||| |||| ||||| |||| ||||| |||||| |||| ||||||||||||| ||| |||||||| || ||  ||  ||| |||| ||||||||||||    
T  23407763 catttcgttcataataatagtagagatataagatggaatcttaatatgaatatggaaactagcatgatgcgaagacatcctaacaaaactatgagcgact 23407862  T
Q  191 t 191  Q
    |    
T  23407863 t 23407863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 20214328 - 20214282
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatat 137  Q
    ||||||||||| ||||| |||| |||||||| |||||||||||||||    
T  20214328 catttcattcaaaataatagtagagatacaaaatgaaatcctaatat 20214282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 32025622 - 32025545
Alignment:
Q  114 agatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    ||||| || ||||||| ||||||| |||||| ||| |||||||||   ||  ||||||||||||||||||||| ||||    
T  32025622 agatataacatgaaattctaatataaatatggaaactagcatgacatgaagtcactctagcaaagctatgagcaactt 32025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 11503083 - 11503189
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||    
T  11503083 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcgaagctatgagcgact 11503182  T
Q  191 tagttgg 197  Q
    | |||||    
T  11503183 tcgttgg 11503189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 25663630 - 25663524
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| || | |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  25663630 catttcattcaaaataataggagagatacaagatggaatcctaatatgaatatggaaaatagcatgacgcaaatccactctagcaaagctatgagcgact 25663531  T
Q  191 tagttgg 197  Q
    | |||||    
T  25663530 tcgttgg 25663524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 5839890 - 5839784
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    |||||||||||  |||| |||| |||||||||||||||| ||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  5839890 catttcattcatgataatagtagagatacaagatgaaattctaatattaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 5839791  T
Q  191 tagttgg 197  Q
    | |||||    
T  5839790 tcgttgg 5839784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 32282857 - 32282963
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||| |||||  |||||||||||||||||||||||||    
T  32282857 catttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgatgcaaagtcactctagcaaagctatgagcgact 32282956  T
Q  191 tagttgg 197  Q
    | |||||    
T  32282957 tcgttgg 32282963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 32578176 - 32578088
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagc 179  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||| |||||||||||    
T  32578176 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccattctagcaaagc 32578088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 36531261 - 36531161
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| ||| |||||||| |||||||||||||||||| ||||||||||||| |||||| | ||||||||| |||| |||||||    
T  36531261 catttcattcataataatagtagagaaacaagatggaatcctaatatgaatatggaaattagcatgacacaaaactattctagcaaaactataagcgact 36531162  T
Q  191 t 191  Q
    |    
T  36531161 t 36531161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 40395352 - 40395259
Alignment:
Q  103 aataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttg 196  Q
    ||||| |||| ||||||||||| |||| |||||||||||||| ||| || |||||||| || ||||||||||||||||||||| ||||||||||    
T  40395352 aataatagtagagatacaagataaaattctaatatgaatatggaaactaacatgacgcgaatccactctagcaaagctatgagtgacttagttg 40395259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 10342478 - 10342381
Alignment:
Q  103 aataacagtaaagatacaagatgaaatcctaata---tgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttgg 197  Q
    ||||| |||| ||||| |||||| ||||||||||   |||||||||||| ||||||||| |||| ||| | |||||||||||||||||| || |||||    
T  10342478 aataatagtagagatataagatggaatcctaataatatgaatatgaaaactagcatgacacaaagccattttagcaaagctatgagcgatttcgttgg 10342381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 6838 - 6733
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||    
T  6838 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccgctctagcaaagctatgagcgact 6739  T
Q  191 tagttg 196  Q
    | ||||    
T  6738 tcgttg 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 8458022 - 8457922
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||| |||||||    
T  8458022 catttcattcataataatagtagagatacaagatgaaatcctaatatgaatatgaaaactagcatgacgcaaagccattatagcaaagctataagcgact 8457923  T
Q  191 t 191  Q
    |    
T  8457922 t 8457922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 51952061 - 51951964
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcga 188  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||    
T  51952061 catttcattcataataatagtagagatacaagatggaatcctaatatgaatatgaaaactagcatgacgtaaagccactctagcaaaactatgagcga 51951964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 43018369 - 43018475
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||| |||    
T  43018369 catttcattcataataatagtagagatacaagatggaatcataatatgaatatggaaactagcatgacgcaaaaccactatagcaaaactatgagcaact 43018468  T
Q  191 tagttgg 197  Q
    | |||||    
T  43018469 ttgttgg 43018475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 51191886 - 51191992
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||  || |||||||||||||||| |||||    
T  51191886 catttcattcataataatagtacagatacaagatgaaatcataatatgaatatggaaactagcatgacgcaaagtcaatctagcaaagctatgaacgact 51191985  T
Q  191 tagttgg 197  Q
    | |||||    
T  51191986 tcgttgg 51191992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 55218660 - 55218766
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||| |  |||| |||| || ||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  55218660 catttcatttatgataatagtagaggtacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 55218759  T
Q  191 tagttgg 197  Q
    | |||||    
T  55218760 tcgttgg 55218766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 39383577 - 39383472
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||| ||| |||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||||| |||||    
T  39383577 catttcattcataataatagtagagatacaaaatggaatcataatatgaatatggaaattaacatgacgcaaaaccactcgagcaaagctatgaacgact 39383478  T
Q  191 tagttg 196  Q
    | ||||    
T  39383477 tcgttg 39383472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 39133777 - 39133677
Alignment:
Q  97 attcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttg 196  Q
    ||||| ||||| |||| |||||||||||  |||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||| ||||    
T  39133777 attcaaaataatagtagagatacaagattgaatcctaatatgaatatggaaactagcatgacgcaaagtcactctagcaaagctatgagcgacttcgttg 39133678  T
Q  197 g 197  Q
    |    
T  39133677 g 39133677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 21689861 - 21689773
Alignment:
Q  92 atttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagct 180  Q
    |||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||| || ||||||||||| ||||||||||||||||    
T  21689861 atttcattcataataatagtagagatacaagatgaaatcataatatgaatatggaaactaacatgacgcaaagccactctagcaaagct 21689773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 26400301 - 26400195
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||| ||| |||| ||||||||||||| ||| ||||||||||| ||||    |||||||| ||||||||||||    
T  26400301 catttcattcataataatagtagagatacaatatggaatcataatatgaatatggaaactagcatgacgcgaaactttcctagcaaaactatgagcgact 26400202  T
Q  191 tagttgg 197  Q
    | |||||    
T  26400201 ttgttgg 26400195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 7622760 - 7622664
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcga 188  Q
    ||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||| || ||||  ||||||| |||| |||||    
T  7622760 catttcatttataataatagtagagatacaagatgaaatcctaatatgaatatgaaaactagcat-acgcgaagccaccttagcaaatctataagcga 7622664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 13444220 - 13444138
Alignment:
Q  114 agatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttg 196  Q
    ||||| |||||| |||||||||||||||||| ||| ||| ||||||  || |||  | || ||||||||||||||||| ||||    
T  13444220 agataaaagatggaatcctaatatgaatatggaaactagaatgacgtgaagccaaccgaggaaagctatgagcgacttcgttg 13444138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 2213 - 2319
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||  |||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||    
T  2213 catttcattcataataatagtagagatacaagatagaatcctaatatgaatatggaaactagcatgacgcaaagtcactctagcaaagctatgagcgact 2312  T
Q  191 tagttgg 197  Q
    | |||||    
T  2313 tcgttgg 2319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 187251 - 187145
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| |    
T  187251 catttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactatagcaaagctatgagcgaat 187152  T
Q  191 tagttgg 197  Q
    | |||||    
T  187151 tcgttgg 187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 30796812 - 30796918
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||| ||||||| |||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30796812 catttcattcaaaataatagtagagatgcaagatggaatcctaatatgaatatggaaactagcaagacgcaaagccactctagcaaagctatgagcgact 30796911  T
Q  191 tagttgg 197  Q
    | |||||    
T  30796912 tcgttgg 30796918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 9609516 - 9609622
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    |||||||| || ||||| |||| |||||||||||| |||||||||||||||||| ||| |||||||| ||||| |||||||||| |||||||||||||||    
T  9609516 catttcatacaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgatgcaaagccactctagcgaagctatgagcgact 9609615  T
Q  191 tagttgg 197  Q
    | |||||    
T  9609616 tcgttgg 9609622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 29242122 - 29242222
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||| ||| ||||||||||| |||||| ||| |||||||| | ||| ||||||||||||||||||||||||||    
T  29242122 catttcattcaaaataatagtagagatacaatatggaatcctaatataaatatggaaactagcatgatgtaaagccactctagcaaagctatgagcgact 29242221  T
Q  191 t 191  Q
    |    
T  29242222 t 29242222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 36978832 - 36978729
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccact---ctagcaaagctatgagcg 187  Q
    ||||||||||| ||||| |||| |||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||    || ||||||||||||||    
T  36978832 catttcattcataataatagtagagatacaagatggaatcctaatataaatatgaaaactagcatgacgcgaaaccacttaattaacaaagctatgagcg 36978733  T
Q  188 actt 191  Q
    ||||    
T  36978732 actt 36978729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 1722096 - 1721990
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    |||||| |||| ||||| | || ||||||||||||||||  ||||||||||||| ||| ||||||||||| || |||||||||| || ||||||||||||    
T  1722096 catttctttcataataataatagagatacaagatgaaattttaatatgaatatggaaactagcatgacgcgaagccactctagccaaactatgagcgact 1721997  T
Q  191 tagttgg 197  Q
    | |||||    
T  1721996 tcgttgg 1721990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 39861051 - 39860951
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    |||||| |||| ||||| |||| |||||||||||  |||| ||||||||||||| ||| ||||||||||| || |||| ||||||||  |||||||||||    
T  39861051 catttctttcataataatagtagagatacaagattgaatcataatatgaatatggaaactagcatgacgcgaagccaccctagcaaaattatgagcgact 39860952  T
Q  191 t 191  Q
    |    
T  39860951 t 39860951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 27452532 - 27452573
Alignment:
Q  114 agatacaagatgaaatcctaatatgaatatgaaaattagcat 155  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  27452532 agatacaagatgaaattctaatatgaatatggaaactagcat 27452573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 48522289 - 48522184
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||| | ||||| |||| ||||| |||||| |||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  48522289 catttcatttataataatagtagagatataagatggaatcttaatatgaatatggaaactagcatgacgcaaagccactctagcaaagctatgagcgact 48522190  T
Q  191 tagttg 196  Q
    | ||||    
T  48522189 tcgttg 48522184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 15393517 - 15393584
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgac 158  Q
    ||||||||| | |||||||||| ||||||||||||||||| |||||||||||  ||||||||||||||    
T  15393517 catttcatttataataacagtagagatacaagatgaaatcttaatatgaatacaaaaattagcatgac 15393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 26347466 - 26347367
Alignment:
Q  92 atttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgactt 191  Q
    |||| ||||| ||||| |||| |||||||||||| |||| |||||| |||||  ||||||| |||| | ||| ||||||||  || | ||||||||||||    
T  26347466 attttattcataataatagtagagatacaagatggaatcataatataaatatagaaattagtatgatgtaaagccactctaataaggttatgagcgactt 26347367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 19956658 - 19956605
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatg 144  Q
    ||||||||||| ||||| | || |||||||||||| |||||||||||| |||||    
T  19956658 catttcattcataataatattatagatacaagatggaatcctaatatgcatatg 19956605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 5416 - 5310
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| |||  ||||||||||||| |||||||||||| |||||  |||| |||||||| |||||||||||    
T  5416 catttcattcataataatagtagagatacaagatggaattttaatatgaatatggaaattagcatgatgcaaagtcactatagcaaagttatgagcgact 5317  T
Q  191 tagttgg 197  Q
    | |||||    
T  5316 tcgttgg 5310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 58525 - 58419
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgact 190  Q
    ||||||||||| ||||| |||| |||||||||||| || ||||||||||||||| ||| |||||||||  ||| |||||| |||||||||||||| ||||    
T  58525 catttcattcataataatagtagagatacaagatggaaccctaatatgaatatggaaactagcatgacataaagccactcgagcaaagctatgagagact 58426  T
Q  191 tagttgg 197  Q
    | |||||    
T  58425 tcgttgg 58419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 216575 - 216481
Alignment:
Q  103 aataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaaaccactctagcaaagctatgagcgacttagttgg 197  Q
    ||||| |||| |||||  ||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||||||  ||||||||||| |||||    
T  216575 aataatagtagagatattagatggaatcctaatatgaatatgaaaactagcatggcgcaaagccactctagcaaaggaatgagcgacttcgttgg 216481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 5326 - 5398
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatatgaaaattagcatgacgcaaa 163  Q
    |||||||||||  |||| |||| |||||||||||| |||| |||||||||||| |||| || |||||||||||    
T  5326 catttcattcatgataatagtagagatacaagatggaatcttaatatgaatataaaaactaacatgacgcaaa 5398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 20755 - 20703
Alignment:
Q  91 catttcattcagaataacagtaaagatacaagatgaaatcctaatatgaatat 143  Q
    ||||||||| | ||||| |||| |||||||||||| |||| ||||||||||||    
T  20755 catttcatttataataatagtagagatacaagatgtaatcttaatatgaatat 20703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University