View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_34 (Length: 430)
Name: NF17716_low_34
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 3219317 - 3219693
Alignment:
| Q |
20 |
cgggagaccgatctggatgagaatttttcaacagtgctacaattccactgagatgaaaacaagacattgaggtaccattattaattgttaaatcaacatt |
119 |
Q |
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| T |
3219317 |
cgggagaccgatctggatgagaatttttcaacagtgctgcaattccattgagatgaaaacaagacattgaggtaccattattaattgttaaatcaacatt |
3219416 |
T |
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| Q |
120 |
tacagttttgtttgattgcaatatcaatcaatattattcaaaaattatggaaatacgattttcttttcctgattgagtaaattaagtacattgtttgtgt |
219 |
Q |
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| T |
3219417 |
tacagttttgtttgattgcaatatcaatcaatattattcaaaaattatggaaatacgattttcttttgctgattgagtaaattaagtacattgtttctgt |
3219516 |
T |
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| Q |
220 |
agacgatctttacttactactattactcagtgcgattaggcacacttgccaaattatgaagggtggcaaaggattctggatttcactacagtacataaat |
319 |
Q |
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| T |
3219517 |
agacgatctttacttactactattactcagtgcgatttggcacacttgccaaattatgaagggtggcaaaggattctggatttcactacagtacataaat |
3219616 |
T |
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| Q |
320 |
tttgtaaagtttgttggcaattgtcaatagctacattggtgcttaatctgatcaaccatagtgcttaagtttctgga |
396 |
Q |
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| T |
3219617 |
tttgtaaagtttgttggcaattgtcaatagctacattggtgcttaatctgatcaaccatagtgcttaagtttctgga |
3219693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 396
Target Start/End: Original strand, 3224244 - 3224617
Alignment:
| Q |
23 |
gagaccgatctggatgagaatttt-tcaacagtgctacaattccactgagatgaaaacaagacattgaggtaccattattaattgttaaatcaacattta |
121 |
Q |
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| T |
3224244 |
gagaccaatctggatgatagttttatcaacagtactgcaattccactgagatgagaacaagacattgaggtaccattattaattattaaatcaacgtcta |
3224343 |
T |
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| Q |
122 |
cagttttgtttgattgcaatatcaatcaatattattcaaaaattatggaaatacgattttcttttcctgattgagtaaattaagtacattgtttgtgtag |
221 |
Q |
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| T |
3224344 |
cagttttgttcgattgcaatatcaatcaatattattcaatcattacctaaatacgattttctttat-tgagtgagtaaattaagtacagtgtttgtgtag |
3224442 |
T |
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| Q |
222 |
acgatctttacttactactattactcagtgcgattaggcacacttgccaaattatgaagggtggcaaaggattctggatttcactacagtacataaattt |
321 |
Q |
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| T |
3224443 |
atgatctttacttgctagtagtactcggtgcgatttgccaaacttgccaaattatgaagggtggcaaaggattctggatttcaatacagtacatgaattt |
3224542 |
T |
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| Q |
322 |
tgtaaagtttgttggcaattgtcaatagctacattggtgcttaatctgatcaaccatagtgcttaagtttctgga |
396 |
Q |
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| T |
3224543 |
tataaagtttgttgccaattgtcaatagttgcattgttccttaatctgatcaaccatagtgcttaagtttctgga |
3224617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 3215811 - 3215886
Alignment:
| Q |
20 |
cgggagaccgatctggatgagaatttttcaacagtgctacaattccactgagatgaaaacaagacattgaggtacc |
95 |
Q |
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| T |
3215811 |
cgggagaccaatctggatgagagtttttcaacagagcagcaattccactgagatgtggacaagacattgaggtacc |
3215886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 3219696 - 3219729
Alignment:
| Q |
387 |
agtttctggaagtgttgatactatgtcacctatg |
420 |
Q |
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| T |
3219696 |
agtttctggaagtgttgatactatgtcacctatg |
3219729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 3207877 - 3207950
Alignment:
| Q |
22 |
ggagaccgatctggatgagaatttttcaacagtgctacaattccactgagatgaaaacaagacattgaggtacc |
95 |
Q |
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||||||| |||||||||||| |||||||||| || |||| ||||| |||||| ||| |||||||||||||| |
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| T |
3207877 |
ggagaccaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacc |
3207950 |
T |
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