View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_low_39 (Length: 417)
Name: NF17716_low_39
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 29649360 - 29648960
Alignment:
| Q |
11 |
cataggtcaataaataaactacacaaatgatttaaccattttagcgaaccatgcaatcgtaccatcaacaataaataaacttgaattcacgtaacctatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29649360 |
cataggtcaataaataaactacacaaatgatttaaccattttagtgaaccatgcaatcgcaccatcaacaataaataaacttgaattcacgtaacctatt |
29649261 |
T |
|
| Q |
111 |
tcttgtatgccaaattgcatcagctatagataatacaataaaatgaaaatcagaaacctagacagacaagcaaaaactatcatgtccatcttgttaaac- |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29649260 |
tcttgtatgccaaattgtatcagctatagataatacaacataatgaaaatcaggaacctagacagacaagcaaaaactatcatgtccatcttgttaaaca |
29649161 |
T |
|
| Q |
210 |
----------tatctgtttaatataggcatgattcaataaatacaaacaaacataagagattgtatacttatatacatggtatgatatgcctattgataa |
299 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29649160 |
attgttaaactatctgtttaatataggcttgattcaataaatacaaacaaacataagagattatatacttatatacatggtattatatgcccattgataa |
29649061 |
T |
|
| Q |
300 |
caaaaatcctaacaaatcatttaggatatcctaaaacagtgttaagacatagaaaagttattatcatatatttctcataatttctaacagagaccaagaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29649060 |
caaaaatcctaacaaatcatttaggatatcctaaaacagtgttaagacatagaaaagttattatcatatatttctcataatttctaacagagaccaagaa |
29648961 |
T |
|
| Q |
400 |
a |
400 |
Q |
| |
|
| |
|
|
| T |
29648960 |
a |
29648960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 29820006 - 29820184
Alignment:
| Q |
26 |
aaactacacaaatgatttaaccattttagc-gaaccatgcaatcgtaccatcaacaataaataaacttgaattcacgtaacctatttcttgtatgccaaa |
124 |
Q |
| |
|
||||| ||||||||||| || ||||||| | || |||||||||| ||||| ||||||||| | ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
29820006 |
aaactgcacaaatgattcaagcattttaactgagccatgcaatcacaccattaacaataaa----cctgaatccacgtaacctattgcttgtatgccaaa |
29820101 |
T |
|
| Q |
125 |
ttgcatcagctatagataatacaataaaatgaaaatcagaaacctagacagacaagcaaaaactatcatgtccatcttgttaaac |
209 |
Q |
| |
|
||| |||||||||||||| |||| ||||| |||||||| ||||||| | |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
29820102 |
ttgtatcagctatagata--acaagaaaataaaaatcaggaacctagtcggacaagcagaaactatcatgtccaccttgttaaac |
29820184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University