View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_4 (Length: 624)
Name: NF17716_low_4
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 15 - 611
Target Start/End: Complemental strand, 24439449 - 24438851
Alignment:
| Q |
15 |
tataatatccactgaacatgattgcatattggtaacttggtatgttagtaatggctacgtaaaataaacttgagatggtatgttagtaatggctatttaa |
114 |
Q |
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| T |
24439449 |
tataatatccactgaacatgattgcatattggtaacttggtatgttagtaatggctacgtaaaataaacttgagatggtatgttagtaatggctatttaa |
24439350 |
T |
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| Q |
115 |
a-tcaactagagatggtaaaaagaattcgacgatgcatcaataatattaaaaaatgaacttatttcttgttaaaataatatgaaatccgtacatcaattg |
213 |
Q |
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| T |
24439349 |
aatcaactagagatagtaaaaagaattcgacgatgcatcaataatattaaaaaatgaacttatttcttgataaaataatatgaaatccgtacatcaattg |
24439250 |
T |
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| Q |
214 |
caatgtttgtagtaccaattactgctatcttcaagttatgcatctctttgaaatgtaagttcatccatagttactgaaggaaaccatatcaaagtaaaaa |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24439249 |
caatgtttgtagtaccaattacttctatcttcaagttatgcatctctttgaaatgtaagttcatccatagttactgaaggaaaccatatcaaagtaaaaa |
24439150 |
T |
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| Q |
314 |
accatgtgatgtccctatatcatttgaagtgtgaatgattgaagtggcagtgct-aggctataatctaatacacaaacattatttttctaattgatggta |
412 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24439149 |
accatgtgatgtccctatatcatttgaaatgtgaatgattgaagtggcagtgctaaggctataatctaatacacaaacattatttttctaattgatggta |
24439050 |
T |
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| Q |
413 |
gttgaatttgacaaaagatcagtgtacttggttgagagaaatccaaaagattttcctgaaatcacattcgtaagcacgattaacttgggataaataataa |
512 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24439049 |
gttgaatttgacaaatgatcactgtacttggttgagagaaatccaaaagattttcctgaaatcacattcgtaagcacgattaacttgggataaataataa |
24438950 |
T |
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| Q |
513 |
agttttttgcgaaaataattgtttactctaattgaactgttgatctatatatagagggttctgtgtgttgttctcaattatagattacaaagatcataa |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24438949 |
agttttttgcgaaaataattgtttactctaattgaactgttgatctatatatagagggttctgtgtgttgttctcaattatagattacaaagatcataa |
24438851 |
T |
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