View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_41 (Length: 408)
Name: NF17716_low_41
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 29135935 - 29135553
Alignment:
| Q |
9 |
gaaatgaaaggtagctgttgtttttgctgaggaacattaggagaggttgcacttgcagcagttttgttcttgttttggagggaacaacaaataggcgtcg |
108 |
Q |
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| T |
29135935 |
gaaatgaaaggtagctgttgtttttgctgaggaacattaggagaggttgcacttgcagcagttttgttcttgttttggagggaacaacaaataggcgtcg |
29135836 |
T |
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| Q |
109 |
ttttttcctcaactgtggccattgcaaaggattagcaagctcaccgtagtaaattccactgtaatattccactgacatacagtaatagtattcacacttg |
208 |
Q |
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| T |
29135835 |
ttttttcctcaactgtggccattgcaaaggattagcaagctcaccgtagtaaattccactgtaatattccactgacatacagtaatagtattcacacttg |
29135736 |
T |
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| Q |
209 |
tttcaccttccttccttccaccactctcactctcaatgccaagatcaacacaaacacaaaaacacactctcttttgaagtagctagagagaatgaggagt |
308 |
Q |
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| T |
29135735 |
tttcaccttccttccttccaccactctcaccctcaatgccaagatcaacacaaacacaaaaacacactcttttttgaagtagctagagagaatgaggagt |
29135636 |
T |
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| Q |
309 |
tgtgattggatgaaatgaaagatacttagttactatataataactagatttcttttcatgctttccagctagaccaccaatgt |
391 |
Q |
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| T |
29135635 |
tttgattggatgaaatgaaagatacttagttactatataataactagatttcttctgatgctttccagctagaccaccaatgt |
29135553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 14294528 - 14294439
Alignment:
| Q |
101 |
aggcgtcgttttttcctcaactgtggccattgcaaaggattagcaagctcaccgtagtaaattccactgtaatattccactgacatacag |
190 |
Q |
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| T |
14294528 |
aggcgtcgttttttcctgagctgtggccattgtgaagggttagcaagctcaccgtacaaaactgtactgtagtattccactgacatacag |
14294439 |
T |
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