View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_42 (Length: 408)
Name: NF17716_low_42
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_42 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 237 - 408
Target Start/End: Original strand, 11808435 - 11808606
Alignment:
| Q |
237 |
gaccaacaaaatctaatattgaaattatttttaaagtacatatttgcaggtgtttcatttccattcatccacaaagacagacttcaaaaccaagaagatt |
336 |
Q |
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| T |
11808435 |
gaccaacaaaatctaatattgaaattatttttaaagtacatatttgcaggtgtttcatttccattcatccacaaagacagactccaaaaccaagaagatt |
11808534 |
T |
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| Q |
337 |
ttcttcttaaatgcatacaaggaaaatctttcaaacaaaaatgtccaacagacaaccctacaacacataacc |
408 |
Q |
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| T |
11808535 |
ttcttcttaaatgcatacaaggaaaatctttcaaacaaaaatgtccaagagacaaccctacaacacataacc |
11808606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 11808217 - 11808386
Alignment:
| Q |
17 |
aatggtatatcactcttttttcattatttgttcattttaacattataattgctacccctttatcattattatgtgaacatttttgacaccaagttagaac |
116 |
Q |
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| T |
11808217 |
aatggtatatcactcttttttcattatttgttcattttaacattataattgctaccccttt---attattatgtgaacatttttgacaccaagttagaac |
11808313 |
T |
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| Q |
117 |
tattggcctttcttagcataaataaatg-tgtgacatataattgatctatgaaggagctagtctaatattgga |
188 |
Q |
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| T |
11808314 |
tattggcatttcttagcataaataaatgttgtgacatataattgatctatgaaggagctagtctaatattgga |
11808386 |
T |
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