View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_43 (Length: 406)
Name: NF17716_low_43
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 38577420 - 38577044
Alignment:
| Q |
17 |
actaactaactagcatatggtttgagtaggtggatgaagcaacggacaagttcagtgagcatgctcctcatattgctaagcagcttacggacaaaaccaa |
116 |
Q |
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| T |
38577420 |
actaactaactagcatatggtttgagtaggtggatgaagcaactgacaagttcagtgagcatgctcctcatattgctaagcagcttacggacaaaaccaa |
38577321 |
T |
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| Q |
117 |
atattttattcagaaagtaacacatgaagcggggaaagttgtgagtgtgggacgatctgaaggaccaagagcagctgtagattatgttgcttcagagacc |
216 |
Q |
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| T |
38577320 |
atattttattcagaaagtaacacatgaagcggggaaagttgtgagtgtgggtcgatctgaaggaccaagagcagctgtagattatgttgcttcagagacc |
38577221 |
T |
|
| Q |
217 |
aagaatttgctactaatcaattcagtgaagctgtggactggactcaacaaatttccaccattccatgcagtggcagagataacaattcccactgctgctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38577220 |
aagaatttgctactaatcaattcagtgaagctgtggactggactcaacaaatttccaccattccatgcagtggcagagataacaattcccactgctgctc |
38577121 |
T |
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| Q |
317 |
actggtctgagaagtacaaccatgcaatcaaggacatggctggaaagggttatagttttgttgggtatttacctttg |
393 |
Q |
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| T |
38577120 |
actggtctgagaagtacaaccatgcaatcaaggacatggctggaaagggttatagttttgttgggtatttacctttg |
38577044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 38590403 - 38590047
Alignment:
| Q |
19 |
taactaactagcatatggtttgagtaggtggatgaagcaacggacaagttcagtgagcatgctcctcatattgctaagcagcttacggacaaaaccaaat |
118 |
Q |
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| T |
38590403 |
taactgactagcatatgatttgagtaggtggatgaagcaaccgacaagttcagtgagcatgctactcatattgctaagcagcttacagacaaaacaaaat |
38590304 |
T |
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| Q |
119 |
attttattcagaaagtaacacatgaagcggggaaagttgtgagtgtgggacgatctgaaggaccaagagcagctgtagattatgttgcttcagagaccaa |
218 |
Q |
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|| |||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
38590303 |
tcttgattcagaaagtaacacatgaggcagggaaagttg-----------------gaag-accaagagcagctgtagattatgttgctacagagaccaa |
38590222 |
T |
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| Q |
219 |
gaatttgctactaatcaattcagtgaagctgtggactggactcaacaaatttccaccattccatgcagtggcagagataacaattcccactgctgctcac |
318 |
Q |
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| T |
38590221 |
gaatttgctactaattaattcagtgaagctttggactggactcaacaaatttccaccattccatgcagcagcagagatgacaattcccactgccgctcac |
38590122 |
T |
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| Q |
319 |
tggtctgagaagtacaaccatgcaatcaaggacatggctggaaagggttatagttttgttgggtatttacctttg |
393 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38590121 |
tggtctaagaaatacaaccatgcaatcaaggacatggctggaaagggttatagttttgttgggtatttagctttg |
38590047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 365
Target Start/End: Original strand, 34651541 - 34651636
Alignment:
| Q |
270 |
tccaccattccatgcagtggcagagataacaattcccactgctgctcactggtctgagaagtacaaccatgcaatcaaggacatggctggaaaggg |
365 |
Q |
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||||||||||||||||||||||||||| || |||| || ||||| || ||||| || ||||| ||||||| | |||||||| |||||||||| |
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| T |
34651541 |
tccaccattccatgcagtggcagagatggcagttccaacagctgcacattggtcagaaaagtataaccatgttgttaaggacattactggaaaggg |
34651636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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