View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_44 (Length: 406)
Name: NF17716_low_44
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 2057123 - 2057491
Alignment:
| Q |
10 |
aacaatattttgcagagaattcgttatttaccaatggctcgggtaatagttttgtagcacttcgagttacaacatatgtggatgatcaaccaattggttt |
109 |
Q |
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| T |
2057123 |
aacaaaattttgcagagaattcgttatttaccaatggctcgggtaatagttttgtagcacttcgagttacaacatatgtggatgatcaaccaattgattt |
2057222 |
T |
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| Q |
110 |
tgcatctatcttggagaattcttgattacttggaagtcaaggaaacaatcaacaaagtcacgttcatcgactgaggctgagtatcgtgctttagcagttg |
209 |
Q |
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| T |
2057223 |
tgcatctatcttggagaattcttgattacttggaagtcaaggaaacaatcaacaaagtcacg-----------aggctgagtatcgtgctttagcagttg |
2057311 |
T |
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| Q |
210 |
taaccaatgagttgttatggattaaacagctccttagagcttttgaaattgatatgtctacatctatggctctgtgtgatagcaagtcagccatacaact |
309 |
Q |
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| T |
2057312 |
taaccaatgagttgttatggattaaacagctccttagagcttttgaaattgatatgtctacatctatggctctgtgtgatagcaagtcagccatacaact |
2057411 |
T |
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| Q |
310 |
tgccaacgatccaactacgaatgtgaagtcaaaacataattcatatgtaagtctagtcaacaattgtcaaaccctcttac |
389 |
Q |
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| T |
2057412 |
tgccaacgatccaactacgaatgtgaagtcaaaacataattcatatgtaagtctagtcaacaattgtcaaaccctcttac |
2057491 |
T |
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