View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_45 (Length: 401)

Name: NF17716_low_45
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_45
NF17716_low_45
[»] chr5 (16 HSPs)
chr5 (56-386)||(20074471-20074801)
chr5 (262-305)||(31222909-31222952)
chr5 (160-205)||(37932354-37932399)
chr5 (141-205)||(2143138-2143202)
chr5 (162-197)||(5107245-5107280)
chr5 (141-196)||(18391605-18391660)
chr5 (154-212)||(29560875-29560933)
chr5 (167-205)||(35109431-35109469)
chr5 (160-197)||(6624800-6624837)
chr5 (160-205)||(17145340-17145385)
chr5 (141-214)||(22901964-22902037)
chr5 (160-196)||(3052303-3052339)
chr5 (159-199)||(16579372-16579412)
chr5 (159-195)||(25709756-25709792)
chr5 (141-197)||(27086083-27086139)
chr5 (169-205)||(31958460-31958496)
[»] chr4 (32 HSPs)
chr4 (220-368)||(8915508-8915658)
chr4 (269-385)||(8902021-8902137)
chr4 (160-205)||(11166710-11166755)
chr4 (160-197)||(19908716-19908753)
chr4 (160-205)||(34833998-34834043)
chr4 (140-197)||(56551592-56551649)
chr4 (142-194)||(1432862-1432914)
chr4 (141-197)||(3936632-3936688)
chr4 (160-204)||(32737728-32737772)
chr4 (159-191)||(42344624-42344656)
chr4 (167-218)||(7371527-7371578)
chr4 (160-191)||(27871384-27871415)
chr4 (160-199)||(44221471-44221510)
chr4 (162-196)||(1701635-1701669)
chr4 (160-194)||(25978341-25978375)
chr4 (141-191)||(37193254-37193304)
chr4 (162-203)||(12058345-12058386)
chr4 (160-205)||(14542752-14542797)
chr4 (160-205)||(20799386-20799431)
chr4 (160-197)||(29568610-29568647)
chr4 (160-205)||(30420866-30420911)
chr4 (164-205)||(31852380-31852421)
chr4 (141-197)||(32338166-32338223)
chr4 (160-205)||(46745214-46745259)
chr4 (160-197)||(49473669-49473706)
chr4 (141-205)||(2539295-2539359)
chr4 (139-195)||(6520074-6520130)
chr4 (141-197)||(19479477-19479533)
chr4 (160-212)||(26008034-26008086)
chr4 (169-205)||(32139373-32139409)
chr4 (290-322)||(35280488-35280520)
chr4 (141-193)||(46676502-46676554)
[»] chr7 (20 HSPs)
chr7 (274-386)||(24788946-24789058)
chr7 (274-347)||(5101024-5101097)
chr7 (290-370)||(2649185-2649265)
chr7 (141-205)||(46987091-46987155)
chr7 (141-196)||(32513170-32513225)
chr7 (141-194)||(41029277-41029330)
chr7 (142-191)||(41250053-41250102)
chr7 (141-205)||(7872740-7872804)
chr7 (154-205)||(10236897-10236948)
chr7 (166-197)||(19646533-19646564)
chr7 (141-200)||(39280815-39280874)
chr7 (160-199)||(44410622-44410661)
chr7 (160-205)||(6384875-6384920)
chr7 (143-196)||(29237558-29237611)
chr7 (160-197)||(41535713-41535750)
chr7 (160-205)||(47155096-47155141)
chr7 (141-197)||(2391012-2391068)
chr7 (142-194)||(6768710-6768762)
chr7 (169-205)||(17816554-17816590)
chr7 (141-197)||(18714453-18714509)
[»] chr8 (18 HSPs)
chr8 (160-205)||(16843515-16843560)
chr8 (141-205)||(12700989-12701053)
chr8 (141-196)||(44019554-44019609)
chr8 (143-195)||(9070965-9071017)
chr8 (141-197)||(9655997-9656053)
chr8 (141-205)||(19778070-19778134)
chr8 (169-203)||(1922350-1922384)
chr8 (142-196)||(42208470-42208524)
chr8 (160-205)||(2908089-2908134)
chr8 (160-197)||(14303189-14303226)
chr8 (160-205)||(15020785-15020830)
chr8 (160-205)||(38763507-38763552)
chr8 (141-205)||(1244697-1244761)
chr8 (141-197)||(30623298-30623354)
chr8 (141-197)||(33105396-33105452)
chr8 (160-212)||(40815932-40815984)
chr8 (142-190)||(41472484-41472532)
chr8 (141-205)||(42367734-42367798)
[»] scaffold0083 (1 HSPs)
scaffold0083 (141-197)||(45948-46004)
[»] chr6 (19 HSPs)
chr6 (141-197)||(28758290-28758346)
chr6 (141-197)||(15187068-15187124)
chr6 (141-197)||(15473482-15473538)
chr6 (160-200)||(31971553-31971593)
chr6 (160-195)||(1918460-1918495)
chr6 (160-198)||(8637436-8637474)
chr6 (159-197)||(9111070-9111108)
chr6 (160-197)||(404187-404224)
chr6 (160-197)||(655749-655786)
chr6 (160-197)||(2726417-2726454)
chr6 (141-201)||(5679443-5679501)
chr6 (142-191)||(32193865-32193914)
chr6 (159-212)||(34474250-34474303)
chr6 (141-197)||(3808118-3808174)
chr6 (293-333)||(9036357-9036397)
chr6 (170-218)||(13655197-13655245)
chr6 (141-197)||(17829308-17829364)
chr6 (142-182)||(26587398-26587438)
chr6 (141-205)||(32149143-32149207)
[»] chr2 (19 HSPs)
chr2 (141-205)||(24593381-24593445)
chr2 (159-198)||(43356541-43356580)
chr2 (141-191)||(21558812-21558862)
chr2 (160-205)||(24393269-24393314)
chr2 (160-205)||(37320509-37320554)
chr2 (141-205)||(22520222-22520286)
chr2 (141-205)||(24548016-24548080)
chr2 (160-195)||(5137807-5137842)
chr2 (142-205)||(28771588-28771651)
chr2 (142-196)||(12124551-12124605)
chr2 (167-205)||(34903548-34903586)
chr2 (160-194)||(41778947-41778981)
chr2 (160-197)||(4138015-4138052)
chr2 (141-194)||(12893247-12893300)
chr2 (152-197)||(25192185-25192230)
chr2 (141-205)||(2687367-2687430)
chr2 (163-203)||(2939777-2939817)
chr2 (160-196)||(6723078-6723114)
chr2 (160-212)||(20897851-20897903)
[»] chr1 (26 HSPs)
chr1 (141-205)||(17283956-17284020)
chr1 (141-205)||(47528439-47528503)
chr1 (159-194)||(15382822-15382857)
chr1 (154-197)||(17221520-17221563)
chr1 (141-196)||(30795706-30795761)
chr1 (160-218)||(6000122-6000180)
chr1 (141-205)||(38448858-38448922)
chr1 (162-205)||(10052469-10052512)
chr1 (160-191)||(44507936-44507967)
chr1 (141-195)||(23397325-23397379)
chr1 (160-197)||(2994782-2994819)
chr1 (160-205)||(10132436-10132481)
chr1 (160-205)||(21638137-21638182)
chr1 (160-197)||(29251778-29251815)
chr1 (154-199)||(30561741-30561786)
chr1 (160-205)||(30937499-30937544)
chr1 (167-212)||(34366284-34366329)
chr1 (159-196)||(35442878-35442915)
chr1 (137-194)||(40613024-40613081)
chr1 (160-197)||(41973279-41973316)
chr1 (160-196)||(13054897-13054933)
chr1 (169-205)||(23730371-23730407)
chr1 (159-211)||(23981051-23981103)
chr1 (162-202)||(26256084-26256124)
chr1 (142-186)||(28032290-28032334)
chr1 (160-196)||(41362643-41362679)
[»] chr3 (29 HSPs)
chr3 (160-205)||(27397604-27397649)
chr3 (141-205)||(1149061-1149125)
chr3 (141-197)||(13042800-13042856)
chr3 (141-197)||(13050877-13050933)
chr3 (141-205)||(13800672-13800736)
chr3 (141-197)||(22722407-22722463)
chr3 (160-212)||(30200850-30200902)
chr3 (141-205)||(53681869-53681933)
chr3 (162-205)||(25902806-25902849)
chr3 (154-197)||(41990584-41990627)
chr3 (141-190)||(2105705-2105754)
chr3 (160-205)||(4216392-4216436)
chr3 (160-205)||(5349552-5349597)
chr3 (160-205)||(14149538-14149583)
chr3 (160-205)||(19468475-19468520)
chr3 (141-194)||(35492798-35492851)
chr3 (141-194)||(38869521-38869574)
chr3 (160-205)||(45431972-45432017)
chr3 (141-194)||(47255764-47255817)
chr3 (169-205)||(5239828-5239864)
chr3 (159-203)||(14160272-14160316)
chr3 (141-205)||(20671835-20671899)
chr3 (141-205)||(28148460-28148524)
chr3 (141-197)||(35191817-35191873)
chr3 (159-195)||(42074126-42074162)
chr3 (160-212)||(46226010-46226062)
chr3 (169-205)||(51614242-51614278)
chr3 (141-197)||(52119381-52119437)
chr3 (161-205)||(53207995-53208039)
[»] scaffold0160 (1 HSPs)
scaffold0160 (159-212)||(22934-22987)
[»] scaffold0019 (1 HSPs)
scaffold0019 (159-195)||(134656-134692)
[»] scaffold0013 (1 HSPs)
scaffold0013 (162-194)||(102103-102135)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 56 - 386
Target Start/End: Original strand, 20074471 - 20074801
Alignment:
Q  56 aacagacataagaaaaattagggatgattttgatgaaataactagactatagctaaactcactannnnnnn-attcttgtgatcatcttagctcagctag 154  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||| | |    
T  20074471 aacagacgtaagaaaaattagggttgattttgatgaaataactagactatagctaaactcactattttttttattctcgtgatcatcttagctcagtttg 20074570  T
Q  155 taataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaacaaactctccacaaaatcatattcttttaaaattttctaact 254  Q
    |||| |||||| |||||||||| || ||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  20074571 taatgacaatgcataatatatgtaatgtccgagtttcgaaccccggacacctacaaaaaaaactctccacaaaatcatattcttttaaaattttctaact 20074670  T
Q  255 tctttgctatcttttaaataaaatgagaataatagtaatttattataaaaacatacacgagacaatatctttaataaaattatttattgatataataagt 354  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20074671 tctttgctatcttttaaa-aaaatgagaataatagtaatttattataaaaacatacacaagacaatatctttaataaaattatttattgatataataagt 20074769  T
Q  355 tttatatgaaagtgcaaaatggcttcatttat 386  Q
    ||||||||||||||||||||||||||||||||    
T  20074770 tttatatgaaagtgcaaaatggcttcatttat 20074801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 31222909 - 31222952
Alignment:
Q  262 tatcttttaaataaaatgagaataatagtaatttattataaaaa 305  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  31222909 tatcttttaaataaaatgagaataattataatttattataaaaa 31222952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 37932354 - 37932399
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||    
T  37932354 acaatgcataatatatgcaaggtccggggttcgaaccctggccacc 37932399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 2143138 - 2143202
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | |||  |||||||||||||||||||||||||||| |||| ||| |||| ||||    
T  2143138 cttagctcaggtggtaggaacaatgtataatatatgcaaggtccgaagttcaaactctggtcacc 2143202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 5107280 - 5107245
Alignment:
Q  162 aatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||| |||||||||||||||||||||||||||||||    
T  5107280 aatgcataatatatgcaaggtccgaggttcgaaccc 5107245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 18391605 - 18391660
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||||||||| | ||||  |||||| |||| |||||||||||||||||||||||||    
T  18391605 cttagctcagttggtaaggacaatgcataaaatatgcaaggtccgaggttcgaacc 18391660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 29560933 - 29560875
Alignment:
Q  154 gtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    |||| |||||||||||||||||||||| | |||||||||||| | | ||||| ||||||    
T  29560933 gtaacaacaatgtataatatatgcaagattcgaggttcgaactccgaacacccaaaaaa 29560875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 35109431 - 35109469
Alignment:
Q  167 ataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||||||||||||||||||||| || |||||||    
T  35109431 ataatatatgcaaggtccgaggttcgaatcccggacacc 35109469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 6624800 - 6624837
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  6624800 acaatgcataatatatgcaaggtccggggttcgaaccc 6624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 17145385 - 17145340
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||||||| || |||||||||| || |||||||    
T  17145385 acaatgtataatatatgcaagatctgaggttcgaatcccggacacc 17145340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 22901964 - 22902037
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaaca 214  Q
    ||||||| |||||||||  |||||| ||||||||||||| || || | ||||||||| |||||||  |||||||    
T  22901964 cttagctaagctagtaaggacaatgcataatatatgcaaagttcgggattcgaacccaggacaccacaaaaaca 22902037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 3052303 - 3052339
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  3052303 acaatgtataatatatgcaaggttcgaggttcaaacc 3052339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 16579412 - 16579372
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaaccctg 199  Q
    ||||||| ||||||||||||||||||| ||||| |||||||    
T  16579412 aacaatgcataatatatgcaaggtccgtggttcaaaccctg 16579372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 25709756 - 25709792
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  25709756 aacaatgcataatatatgcaaggtccgaggtttgaac 25709792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 27086083 - 27086139
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    ||||| |||| | |||| ||||||||||||||||||||||||||  ||||| |||||    
T  27086083 cttagttcagtttgtaagaacaatgtataatatatgcaaggtccagggttcaaaccc 27086139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 31958496 - 31958460
Alignment:
Q  169 aatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  31958496 aatatatgcaaggtccggggttcgaaccccggacacc 31958460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 220 - 368
Target Start/End: Original strand, 8915508 - 8915658
Alignment:
Q  220 tccacaaaatcatattctt--ttaaaattttctaacttctttgctatcttttaaataaaatgagaataatagtaatttattataaaaacatacacgagac 317  Q
    ||||||||||||| |||||  || || | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8915508 tccacaaaatcatgttcttatttgaattcttctaacctctttgctatattttaaataaaatgagaataatagtaatttattataaaaacatgcacgagac 8915607  T
Q  318 aatatctttaataaaattatttattgatataataagttttatatgaaagtg 368  Q
    | ||||||||| ||||  ||  ||||   || |||||||||||||||||||    
T  8915608 agtatctttaacaaaaacatggattgtgttagtaagttttatatgaaagtg 8915658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 385
Target Start/End: Original strand, 8902021 - 8902137
Alignment:
Q  269 taaataaaatgagaataatagtaatttattataaaaacatacacgagacaatatctttaataaaattatttattgatataataagttttatatgaaagtg 368  Q
    |||||||| ||||||||||| ||||||||||||||||  ||||||| ||||||| ||||||||   | ||||||||| || |||||| ||||||||||||    
T  8902021 taaataaactgagaataatattaatttattataaaaatgtacacgaaacaatatatttaataaccgtgtttattgatttagtaagttctatatgaaagtg 8902120  T
Q  369 caaaatggcttcattta 385  Q
    ||||||  |||||||||    
T  8902121 caaaataacttcattta 8902137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 11166710 - 11166755
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||    
T  11166710 acaatgtataatatatgcaaggtctaaggttcgaaccccggacacc 11166755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 19908716 - 19908753
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| |||||||||||||||||||||||||||||||    
T  19908716 acaatgcataatatatgcaaggtccgaggttcgaaccc 19908753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 34834043 - 34833998
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||||    
T  34834043 acaatgcataatatatgcaaggtccggggttcgaacactggacacc 34833998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 56551649 - 56551592
Alignment:
Q  140 tcttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    ||||||||||| | ||||  |||||| ||||||||||||||||||||||||| |||||    
T  56551649 tcttagctcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaaccc 56551592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 1432862 - 1432914
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    ||||||||| | |||| |||| |||||||||||||||||||||| ||||||||    
T  1432862 ttagctcagttggtaagaacagtgtataatatatgcaaggtccggggttcgaa 1432914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 3936632 - 3936688
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | |||  ||||||| ||||||||||||||||||| |||||||||||    
T  3936632 cttagctcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaaccc 3936688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 32737772 - 32737728
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacac 204  Q
    |||||||||||||||||||||||| | |||||||||||| |||||    
T  32737772 acaatgtataatatatgcaaggtctggggttcgaaccctagacac 32737728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 42344656 - 42344624
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttc 191  Q
    |||||||||||||||||||||||||||||||||    
T  42344656 aacaatgtataatatatgcaaggtccgaggttc 42344624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 7371578 - 7371527
Alignment:
Q  167 ataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaacaaact 218  Q
    ||||||||||||||||||| ||||||||||| ||||||| | |||| |||||    
T  7371578 ataatatatgcaaggtccggggttcgaaccccggacaccaacaaaaaaaact 7371527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 191
Target Start/End: Complemental strand, 27871415 - 27871384
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttc 191  Q
    ||||||||||||||||||||||||||||||||    
T  27871415 acaatgtataatatatgcaaggtccgaggttc 27871384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 44221471 - 44221510
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctg 199  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  44221471 acaatgcataatatatgcaaggtctgaggttcgaaccctg 44221510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 1701635 - 1701669
Alignment:
Q  162 aatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||| ||||||||||||||||||||||||||||||    
T  1701635 aatgcataatatatgcaaggtccgaggttcgaacc 1701669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 25978341 - 25978375
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||| ||||||||||||||||||||||||||||    
T  25978341 acaatgcataatatatgcaaggtccgaggttcgaa 25978375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 37193254 - 37193304
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttc 191  Q
    |||||||||| |||||   |||||||||||||||||||||||||| |||||    
T  37193254 cttagctcagttagtatggacaatgtataatatatgcaaggtccggggttc 37193304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 12058345 - 12058386
Alignment:
Q  162 aatgtataatatatgcaaggtccgaggttcgaaccctggaca 203  Q
    |||| |||||||||||||||| | ||||||||||||||||||    
T  12058345 aatgcataatatatgcaaggttcaaggttcgaaccctggaca 12058386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 14542797 - 14542752
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||| | ||||||||||||| |||||    
T  14542797 acaatgcataatatatgcaaggtctggggttcgaaccctgaacacc 14542752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 20799431 - 20799386
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||||| ||||| |||||||| ||||    
T  20799431 acaatgcataatatatgcaaggtccggggttcaaaccctggtcacc 20799386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 29568610 - 29568647
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  29568610 acaatgcataatatatgtaaggtccgaggttcgaaccc 29568647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 30420866 - 30420911
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||| ||||||   |||||||||||||||||||    
T  30420866 acaatgtataatatatgtaaggtctagggttcgaaccctggacacc 30420911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 31852380 - 31852421
Alignment:
Q  164 tgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||| ||||||||| ||||||||||||||| |||||||    
T  31852380 tgtataatttatgcaagggccgaggttcgaaccccggacacc 31852421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 32338166 - 32338223
Alignment:
Q  141 cttagctcagctagtaataacaatgt-ataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| |||||| |||||||| |||||||||||||||| ||| |||| |||||    
T  32338166 cttagctcagttagtaagaacaatgttataatatatgcaaggttcgaagttcaaaccc 32338223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 46745214 - 46745259
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||||||||| ||||| |||||| |||| ||||    
T  46745214 acaatgtataatatatgcaaggtacgaggatcgaactctggccacc 46745259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 49473669 - 49473706
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  49473669 acaatgcataatatatgcaaggtccggggttcgaaccc 49473706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 2539359 - 2539295
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||| |||| | || |||||||||| || |||||||||||||| |||||||    
T  2539359 cttagctcagttggtaatgacaacgcatgatatatgcaatgttcgaggttcgaaccccggacacc 2539295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 6520074 - 6520130
Alignment:
Q  139 atcttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    |||||| ||||| ||||||  |||||| ||||||||||||||||  |||||||||||    
T  6520074 atcttaactcagttagtaaagacaatgcataatatatgcaaggtttgaggttcgaac 6520130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 19479533 - 19479477
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| || ||  ||||||| ||||||||||||||||||| ||||| |||||    
T  19479533 cttagctcagttaatatgaacaatgcataatatatgcaaggtccggggttcaaaccc 19479477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 26008086 - 26008034
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    |||||| |||||||||||||||||||  |||||| |||| |||||| ||||||    
T  26008086 acaatgcataatatatgcaaggtccgttgttcgatccctagacaccaaaaaaa 26008034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 32139373 - 32139409
Alignment:
Q  169 aatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  32139373 aatatatgcaaggtccggggttcgaaccccggacacc 32139409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 35280488 - 35280520
Alignment:
Q  290 taatttattataaaaacatacacgagacaatat 322  Q
    ||||||||||| |||||||||||||||||||||    
T  35280488 taatttattatcaaaacatacacgagacaatat 35280520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 46676554 - 46676502
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcga 193  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||| |||||||    
T  46676554 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcga 46676502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 386
Target Start/End: Original strand, 24788946 - 24789058
Alignment:
Q  274 aaaatgagaataatagtaatttattataaaaacatacacgagacaatatctttaataaaattatttattgatataataagttttatatgaaagtgcaaaa 373  Q
    ||||| ||||||||| ||| |||||  ||||||||||| |||||||| |||||||||||| | |||||| || |||||| |||||||||||| || | ||    
T  24788946 aaaataagaataataataagttattcaaaaaacatacaggagacaatgtctttaataaaaatgtttattaatttaataatttttatatgaaaatgtacaa 24789045  T
Q  374 tggcttcatttat 386  Q
    |  ||||||||||    
T  24789046 taacttcatttat 24789058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 5101024 - 5101097
Alignment:
Q  274 aaaatgagaataatagtaatttattataaaaacatacacgagacaatatctttaataaaattatttattgatat 347  Q
    ||||||||||||||  ||  ||||| |||||||||||| ||||||||||||| ||||||| || ||||||||||    
T  5101024 aaaatgagaataattatacattattttaaaaacatacatgagacaatatcttcaataaaaatacttattgatat 5101097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 2649185 - 2649265
Alignment:
Q  290 taatttattataaaaacatacacgagacaatatctttaataaaattatttattgatataataagttttatatgaaagtgca 370  Q
    |||||||||||||||||||||| ||||||| |||||||||||  || | |||| || |||||| | ||| |||||||||||    
T  2649185 taatttattataaaaacatacatgagacaacatctttaataattttttgtattcatttaataattcttacatgaaagtgca 2649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 46987091 - 46987155
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||| ||||||||||| |||||||    
T  46987091 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccggacacc 46987155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 32513225 - 32513170
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||| ||||||| ||||  ||||||||||||||||||||||| |||||||||||||    
T  32513225 cttaactcagctggtaagtacaatgtataatatatgcaaggttcgaggttcgaacc 32513170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 41029277 - 41029330
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||||||| | ||||  |||||||||||||||||||||||||| ||||||||    
T  41029277 cttagctcagttggtaaggacaatgtataatatatgcaaggtccggggttcgaa 41029330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 41250102 - 41250053
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttc 191  Q
    ||||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  41250102 ttagctcagttgataagaacaatgtataatatatgcaaggtccgaggttc 41250053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 7872804 - 7872740
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| ||||||||||||||||| | ||||||||||| |||||||    
T  7872804 cttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaacccaggacacc 7872740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 10236948 - 10236897
Alignment:
Q  154 gtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||| ||||||| ||||| |||||||||| |||||||||||||| |||||||    
T  10236948 gtaagaacaatgcataatgtatgcaaggttcgaggttcgaaccccggacacc 10236897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 19646533 - 19646564
Alignment:
Q  166 tataatatatgcaaggtccgaggttcgaaccc 197  Q
    ||||||||||||||||||||||||||||||||    
T  19646533 tataatatatgcaaggtccgaggttcgaaccc 19646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 39280874 - 39280815
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctgg 200  Q
    |||||||||| | |||| ||||||| ||||||||||||||||||| ||||| ||| ||||    
T  39280874 cttagctcagttggtaagaacaatgcataatatatgcaaggtccggggttcaaactctgg 39280815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 44410622 - 44410661
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctg 199  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  44410622 acaatgtataatatatacaaggtccggggttcgaaccctg 44410661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 6384875 - 6384920
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||| | |||||||||||| ||||||    
T  6384875 acaatgcataatatatgcaaggtctggggttcgaaccctagacacc 6384920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 29237611 - 29237558
Alignment:
Q  143 tagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||||||| | |||| ||||||| ||||||||||||||||||  ||||||||||    
T  29237611 tagctcagttggtaagaacaatgcataatatatgcaaggtccagggttcgaacc 29237558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 41535713 - 41535750
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  41535713 acaatgtataatatatgcaagggtcgaggttcgaaccc 41535750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 47155141 - 47155096
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||||  ||||||||||| |||||||    
T  47155141 acaatgcataatatatgcaaggtccagggttcgaaccccggacacc 47155096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 2391012 - 2391068
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | |||| ||||||| ||||||||| |||| |||| |||||||||||    
T  2391012 cttagctcagttggtaagaacaatgcataatatatacaagatccggggttcgaaccc 2391068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 6768762 - 6768710
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    ||||||| | || ||| ||||||| ||||||||||||||||| ||||||||||    
T  6768762 ttagctcggttaataagaacaatgcataatatatgcaaggtctgaggttcgaa 6768710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 17816554 - 17816590
Alignment:
Q  169 aatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  17816554 aatatatgcaaagtccggggttcgaaccctggacacc 17816590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 18714453 - 18714509
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||| ||||| |||||    
T  18714453 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaaccc 18714509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 16843560 - 16843515
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  16843560 acaatgtataatatatgcaaggttcgtggttcgaaccctggacacc 16843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 12701053 - 12700989
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||  | |||||||||||| ||||||||||||| ||||||||||||||| | |||||||    
T  12701053 cttagctcaattggtaataacaatgcataatatatgcaaagtccgaggttcgaactccggacacc 12700989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 44019554 - 44019609
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||||||||| | |||| ||||||| |||||||||||||||||||| |||||||||    
T  44019554 cttagctcagttggtaagaacaatgcataatatatgcaaggtccgaagttcgaacc 44019609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 9070965 - 9071017
Alignment:
Q  143 tagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    |||||||| | ||||  ||||||||||||||||| ||||||||||||||||||    
T  9070965 tagctcagttggtaaggacaatgtataatatatgtaaggtccgaggttcgaac 9071017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 9656053 - 9655997
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  |||||| |||| ||||||||||||||||||||||||||    
T  9656053 cttagctcagttggtaaggacaatgcataaaatatgcaaggtccgaggttcgaaccc 9655997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 19778070 - 19778134
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||| |||||||| ||| ||||||    
T  19778070 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaatcctagacacc 19778134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 1922350 - 1922384
Alignment:
Q  169 aatatatgcaaggtccgaggttcgaaccctggaca 203  Q
    ||||||||||||||||| |||||||||||||||||    
T  1922350 aatatatgcaaggtccggggttcgaaccctggaca 1922384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 42208524 - 42208470
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    ||||||||| | ||||  |||||| ||||||||||||||||||||||||| ||||    
T  42208524 ttagctcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaacc 42208470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 2908134 - 2908089
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| |||||||||||| || ||| |||||||||||||||||||    
T  2908134 acaatgcataatatatgcaggggccggggttcgaaccctggacacc 2908089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 14303189 - 14303226
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  14303189 acaatgtataatatatacaaggtccaaggttcgaaccc 14303226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 15020785 - 15020830
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||||||| |||| ||||| |||||||| ||||    
T  15020785 acaatgtataatatatgcaagatccggggttcaaaccctggccacc 15020830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 38763552 - 38763507
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||| | |||||||||||||| ||||    
T  38763552 acaatgcataatatatgcaaggtctggggttcgaaccctggccacc 38763507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 1244761 - 1244697
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| ||||||||| ||||||| | ||||||||||| |||||||    
T  1244761 cttagctcagttggtaaggacaatgcataatatatacaaggtctggggttcgaaccccggacacc 1244697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 30623298 - 30623354
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  |||||| ||||||||||||||||| | |||||||||||    
T  30623298 cttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccc 30623354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 33105396 - 33105452
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||||| ||   ||||||| ||||||||||||||||||| ||||| |||||    
T  33105396 cttagctcagctggtttgaacaatgcataatatatgcaaggtccggggttcaaaccc 33105452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 40815984 - 40815932
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    ||||| |||||||||||||||||||| | ||||||||  ||||||| ||||||    
T  40815984 acaatatataatatatgcaaggtccgggattcgaacctcggacaccaaaaaaa 40815932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 41472484 - 41472532
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggtt 190  Q
    ||||| ||| |||||  |||||||||||||||||||||||| |||||||    
T  41472484 ttagcgcagttagtatgaacaatgtataatatatgcaaggttcgaggtt 41472532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 42367734 - 42367798
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| |  ||| ||||||| |||||||||| || |||||  ||||||||||||||||||    
T  42367734 cttagctcagttgataagaacaatgcataatatatgaaaagtccggagttcgaaccctggacacc 42367798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 45948 - 46004
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | |||| || ||||||||||||||||||| ||||||||||||||||    
T  45948 cttagctcagttggtaagaataatgtataatatatgcaagatccgaggttcgaaccc 46004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 28758346 - 28758290
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||||| |||| ||||||| ||||||||||||| ||||||||||| |||||    
T  28758346 cttagctcagctggtaagaacaatgcataatatatgcaaagtccgaggttcaaaccc 28758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 15187068 - 15187124
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    ||||||||||||  |||  |||||| ||||||||||||||||||||||||| |||||    
T  15187068 cttagctcagctgataagtacaatgcataatatatgcaaggtccgaggttcaaaccc 15187124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 15473538 - 15473482
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    ||||||||||||  |||  |||||| ||||||||||||||||||||||||| |||||    
T  15473538 cttagctcagctgataagtacaatgcataatatatgcaaggtccgaggttcaaaccc 15473482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 31971553 - 31971593
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctgg 200  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  31971553 acaatgcataatatatgcaaggtccgaggttcaaaccctgg 31971593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 1918495 - 1918460
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    |||||| |||||||||||||||||||||||||||||    
T  1918495 acaatgcataatatatgcaaggtccgaggttcgaac 1918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 8637474 - 8637436
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccct 198  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  8637474 acaatgcataatatatgcaaggtccgaggttcaaaccct 8637436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 9111070 - 9111108
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  9111070 aacaatgcataatatatgcaaggtccggggttcgaaccc 9111108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 404187 - 404224
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  404187 acaatgcataatatatgcaatgtccgaggttcgaaccc 404224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 655786 - 655749
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  655786 acaatgcataatatatgcaaggtccggggttcgaaccc 655749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 2726454 - 2726417
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  2726454 acaatgcataatatatgcaaggtccggggttcgaaccc 2726417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 5679443 - 5679501
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctgga 201  Q
    |||||||||||||||||  |||||| |||||||||||||  |||| ||||| |||||||||    
T  5679443 cttagctcagctagtaaagacaatgcataatatatgcaa--tccggggttcaaaccctgga 5679501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 32193914 - 32193865
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttc 191  Q
    ||||||||| | |||| ||||||| |||||||||||||||| ||||||||    
T  32193914 ttagctcagttggtaagaacaatgcataatatatgcaaggtacgaggttc 32193865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 34474250 - 34474303
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    ||||||| ||||||||||||||||||  ||||||||||| || |||| ||||||    
T  34474250 aacaatgcataatatatgcaaggtccatggttcgaaccccggccaccaaaaaaa 34474303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 3808174 - 3808118
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||| ||||| ||||||  |||||| ||||||||||||||||||||| ||| |||||    
T  3808174 cttaactcagttagtaaggacaatgcataatatatgcaaggtccgagattcaaaccc 3808118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 9036357 - 9036397
Alignment:
Q  293 tttattataaaaacatacacgagacaatatctttaataaaa 333  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  9036357 tttattataaaaagatacaaaagacaatatctttaataaaa 9036397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 13655197 - 13655245
Alignment:
Q  170 atatatgcaaggtccgaggttcgaaccctggacacctaaaaaacaaact 218  Q
    ||||||| || |||||||||||||||||||||||||  ||||| |||||    
T  13655197 atatatgtaaagtccgaggttcgaaccctggacaccacaaaaaaaaact 13655245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 17829364 - 17829308
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  || ||| ||||||||||||| |||||||||||||||||    
T  17829364 cttagctcagttggtaaggactatgcataatatatgcaaagtccgaggttcgaaccc 17829308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 26587398 - 26587438
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggt 182  Q
    ||||||||| |||||| ||||||| ||||||||||||||||    
T  26587398 ttagctcagttagtaagaacaatgcataatatatgcaaggt 26587438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 32149143 - 32149207
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | |||| ||||||| ||||||||||||||||| ||  ||||||  |||||||||    
T  32149143 cttagctcagttggtaagaacaatgcataatatatgcaaggtctgatattcgaattctggacacc 32149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 24593381 - 24593445
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||| ||||||||||||| |||||    
T  24593381 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccctgaacacc 24593445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 43356580 - 43356541
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaaccct 198  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  43356580 aacaatgcataatatatgcaaggtccgaggttcgaaccct 43356541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 21558862 - 21558812
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttc 191  Q
    |||||||||||| ||||  |||||| |||||||||||||||||||||||||    
T  21558862 cttagctcagctggtaaggacaatgcataatatatgcaaggtccgaggttc 21558812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 24393269 - 24393314
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||    
T  24393269 acaatgcataatatatgcaaggtctgaggttcgaaccccggacacc 24393314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 37320554 - 37320509
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||||    
T  37320554 acaatgcataatatatgcaaggttcgaggttcgaaccatggacacc 37320509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 22520222 - 22520286
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||| |||| |||||| ||||||| ||||||||||||||| | ||||||| |||||| ||||||    
T  22520222 cttagttcagttagtaagaacaatgcataatatatgcaaggcctgaggttcaaaccctagacacc 22520286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 24548016 - 24548080
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||  ||||||||| ||||||||| |||||||||||||||||||    
T  24548016 cttagctcagttggtaaggacaatccataatatattcaaggtccggggttcgaaccctggacacc 24548080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 5137842 - 5137807
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    |||||||||||||||||||||||||| |||||||||    
T  5137842 acaatgtataatatatgcaaggtccggggttcgaac 5137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 28771588 - 28771651
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||| | ||||  |||||| |||||||||||||| |||| ||||||||||| |||||||    
T  28771588 ttagctcagttggtaaggacaatgcataatatatgcaagatccgcggttcgaaccccggacacc 28771651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 12124551 - 12124605
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    ||||||||| | ||||  |||||| ||||||||||||||||||| ||||||||||    
T  12124551 ttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaacc 12124605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 34903548 - 34903586
Alignment:
Q  167 ataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  34903548 ataatatatgcaaggtctgaggttcgaaccccggacacc 34903586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 41778981 - 41778947
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||| ||||||||||||||||||||||||||||    
T  41778981 acaatgcataatatatgcaaggtccgaggttcgaa 41778947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 4138015 - 4138052
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  4138015 acaatgtataatatatgcaaggtccgagattcaaaccc 4138052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 12893300 - 12893247
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||||||| |  ||| |||||||||||||||||| ||||||| |||||||||    
T  12893300 cttagctcagttgataagaacaatgtataatatatgtaaggtccaaggttcgaa 12893247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 25192230 - 25192185
Alignment:
Q  152 tagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| || |||||||||||||||||||||  |||||||||||||    
T  25192230 tagtaagaaaaatgtataatatatgcaaggtatgaggttcgaaccc 25192185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 2687430 - 2687367
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | |||| ||||||| || |||||||||| || || |||||||||||||||||||    
T  2687430 cttagctcagttggtaagaacaatgcattatatatgcaaagttcg-ggttcgaaccctggacacc 2687367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 2939817 - 2939777
Alignment:
Q  163 atgtataatatatgcaaggtccgaggttcgaaccctggaca 203  Q
    ||||||||||||||||||||| | ||||||||||| |||||    
T  2939817 atgtataatatatgcaaggtctggggttcgaaccccggaca 2939777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 6723114 - 6723078
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||||||||||||||||||||||||  ||||||||||    
T  6723114 acaatgtataatatatgcaaggtccagggttcgaacc 6723078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 20897851 - 20897903
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    |||||||||||||||||||||||| ||||||  |||||||  |||| ||||||    
T  20897851 acaatgtataatatatgcaaggtctgaggtttaaaccctgtccaccaaaaaaa 20897903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 17283956 - 17284020
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||  |||||||||||||||||||    
T  17283956 cttagctcagttggtaaggacaatgcataatatatgcaaggtccagggttcgaaccctggacacc 17284020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 47528503 - 47528439
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| |||||||| |||||||||||||||||||||| |||||||    
T  47528503 cttagctcagttggtaaggacaatgcataatatacgcaaggtccgaggttcgaaccccggacacc 47528439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 15382857 - 15382822
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    ||||||||||||||||||||||||||||||||||||    
T  15382857 aacaatgtataatatatgcaaggtccgaggttcgaa 15382822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 17221563 - 17221520
Alignment:
Q  154 gtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  17221563 gtaagaacaatgcataatatatgcaaggtccgaggttcgaaccc 17221520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 30795706 - 30795761
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||||||||| | |||| ||||||| |||||||||||||||||| |||||||||||    
T  30795706 cttagctcagttggtaagaacaatgcataatatatgcaaggtccaaggttcgaacc 30795761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 6000180 - 6000122
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaacaaact 218  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||  ||||| |||||    
T  6000180 acaatgcataatatatgcaaggtccgaggttcaaaccccggacaccacaaaaaaaaact 6000122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 38448922 - 38448858
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||| |||||||| || |||||||    
T  38448922 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaatcccggacacc 38448858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 10052512 - 10052469
Alignment:
Q  162 aatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||| || ||||||||||||||| |||||||    
T  10052512 aatgtataatatatgcaggggccgaggttcgaaccccggacacc 10052469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 191
Target Start/End: Complemental strand, 44507967 - 44507936
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttc 191  Q
    ||||||||||||||||||||||||||||||||    
T  44507967 acaatgtataatatatgcaaggtccgaggttc 44507936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 23397379 - 23397325
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    |||| ||||| ||||||| |||||| |||| |||||||||||||| |||||||||    
T  23397379 cttaactcagttagtaatgacaatgcataacatatgcaaggtccggggttcgaac 23397325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 2994782 - 2994819
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  2994782 acaatgtataatatatgcaaggtccggggttcaaaccc 2994819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 10132481 - 10132436
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||| | |||||||||| ||||||||    
T  10132481 acaatgcataatatatgcaaggtctggggttcgaaccttggacacc 10132436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 21638137 - 21638182
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| || |||||||||||||||| ||||||||||| |||||||    
T  21638137 acaatgcatgatatatgcaaggtccggggttcgaaccccggacacc 21638182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 29251778 - 29251815
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  29251778 acaatgcataatatatgcaaggtctgaggttcgaaccc 29251815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 30561741 - 30561786
Alignment:
Q  154 gtaataacaatgtataatatatgcaaggtccgaggttcgaaccctg 199  Q
    |||| ||||||| |||||||||||||||||  ||||||||||||||    
T  30561741 gtaagaacaatgcataatatatgcaaggtctaaggttcgaaccctg 30561786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 30937499 - 30937544
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||||||||||||||||| | ||||||||| | |||||||    
T  30937499 acaatgtataatatatgcaaggtctggggttcgaactccggacacc 30937544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 34366329 - 34366284
Alignment:
Q  167 ataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    |||| |||||||||||| |||||| |||||||||||||| ||||||    
T  34366329 ataacatatgcaaggtctgaggtttgaaccctggacaccaaaaaaa 34366284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 35442878 - 35442915
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  35442878 aacaatgcataatatattcaaggtccgaggttcgaacc 35442915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 40613024 - 40613081
Alignment:
Q  137 tcatcttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||| ||||||| ||| ||||  |||||| ||||||||||||||||||| ||||||||    
T  40613024 tcatattagctcggctggtaaggacaatgcataatatatgcaaggtccggggttcgaa 40613081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 41973279 - 41973316
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  41973279 acaatgcataatatatgcaaggtccggggttcgaaccc 41973316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 13054897 - 13054933
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  13054897 acaatgcataatatatgcaaggtcggaggttcgaacc 13054933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 23730407 - 23730371
Alignment:
Q  169 aatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  23730407 aatatatgcaaggtccggggttcgaaccccggacacc 23730371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 23981103 - 23981051
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaa 211  Q
    ||||||| ||||||||||||| ||||| |||||||||||| | |||| |||||    
T  23981103 aacaatgcataatatatgcaatgtccggggttcgaaccctcgccaccaaaaaa 23981051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 26256124 - 26256084
Alignment:
Q  162 aatgtataatatatgcaaggtccgaggttcgaaccctggac 202  Q
    |||| |||||||||||||| |||| ||||||||||||||||    
T  26256124 aatgcataatatatgcaagatccggggttcgaaccctggac 26256084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 28032290 - 28032334
Alignment:
Q  142 ttagctcagctagtaataacaatgtataatatatgcaaggtccga 186  Q
    ||||||| | |||||| ||||||| ||||||||||||||||||||    
T  28032290 ttagctcggttagtaaaaacaatgcataatatatgcaaggtccga 28032334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 41362643 - 41362679
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaacc 196  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  41362643 acaatgcataatatatgcaaggtcggaggttcgaacc 41362679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 27397649 - 27397604
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||    
T  27397649 acaatgtataatatatgcaaggtctaaggttcgaaccccggacacc 27397604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 1149125 - 1149061
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| |||||||||||||||||   |||||||||||||||||||    
T  1149125 cttagctcagttggtaaggacaatgcataatatatgcaaggtctagggttcgaaccctggacacc 1149061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 13042856 - 13042800
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  ||||| |||||||||||||||||||| |||||||||||    
T  13042856 cttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaaccc 13042800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 13050933 - 13050877
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  ||||| |||||||||||||||||||| |||||||||||    
T  13050933 cttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaaccc 13050877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 13800672 - 13800736
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | |||| ||||||| ||||||||||||||||||   |||||||||| |||||||    
T  13800672 cttagctcagttggtaagaacaatgcataatatatgcaaggtccacagttcgaaccccggacacc 13800736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 22722407 - 22722463
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| |||||  ||||||| |||| |||||||||||||||||||| |||||    
T  22722407 cttagctcagttagtatgaacaatgcataaaatatgcaaggtccgaggttcaaaccc 22722463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 30200850 - 30200902
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    |||||| ||||||||||||||||  ||||||||||||| ||||||| ||||||    
T  30200850 acaatgcataatatatgcaaggtttgaggttcgaaccccggacaccaaaaaaa 30200902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 53681933 - 53681869
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||| ||||| | |||| ||||||| |||||||||||||| |  |||||||||||||||||||||    
T  53681933 cttacctcagttggtaagaacaatgcataatatatgcaagatttgaggttcgaaccctggacacc 53681869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 25902806 - 25902849
Alignment:
Q  162 aatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||||||||||||||| | |||||||||| ||||||||    
T  25902806 aatgtataatatatgcaaggtctggggttcgaaccttggacacc 25902849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 41990627 - 41990584
Alignment:
Q  154 gtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||| ||||||  |||||||||||||||||||||||||||||||    
T  41990627 gtaagaacaatacataatatatgcaaggtccgaggttcgaaccc 41990584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 2105754 - 2105705
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggtt 190  Q
    |||| ||||| | |||| || |||||||||||||||||||||||||||||    
T  2105754 cttaactcagttggtaaaaataatgtataatatatgcaaggtccgaggtt 2105705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 4216436 - 4216392
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| |||||||||||||||| || |||||||||||||||||||    
T  4216436 acaatgcataatatatgcaaggt-cggggttcgaaccctggacacc 4216392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 5349552 - 5349597
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| || |||||||||||||||||||||| |||||||| ||||    
T  5349552 acaatgcattatatatgcaaggtccgaggttcaaaccctggccacc 5349597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 14149583 - 14149538
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||    
T  14149583 acaatgtataatgtatgcaaggtctggggttcgaaccccggacacc 14149538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 19468475 - 19468520
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||||| |||||||| || |||||||    
T  19468475 acaatgcataatatatgcaaggtccgtggttcgaatccgggacacc 19468520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 35492798 - 35492851
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||||||| | |||| ||||||| ||||||||||||| || |||||||||||    
T  35492798 cttagctcagttggtaagaacaatgcataatatatgcaaagttcgaggttcgaa 35492851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 38869574 - 38869521
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||||||| | |||| ||||||| ||||||||| |||| |||||||||||||    
T  38869574 cttagctcagttggtaagaacaatgcataatatatacaagatccgaggttcgaa 38869521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 45431972 - 45432017
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||| ||||||||||||||||||| ||||| |||||||| ||||    
T  45431972 acaatgcataatatatgcaaggtccggggttcaaaccctggccacc 45432017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 47255764 - 47255817
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||||||||| |||  |||||| ||||||||||||||| | |||||||||||    
T  47255764 cttagctcagctggtatgaacaatatataatatatgcaagattcgaggttcgaa 47255817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 5239828 - 5239864
Alignment:
Q  169 aatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  5239828 aatatatgcaaagtccggggttcgaaccctggacacc 5239864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 14160316 - 14160272
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaaccctggaca 203  Q
    ||||||| ||||||||||||| ||||| ||||||||||| |||||    
T  14160316 aacaatgcataatatatgcaaagtccggggttcgaaccccggaca 14160272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 20671899 - 20671835
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | ||||  |||||| |||||| ||||| |||||| ||||||||||||| |||||    
T  20671899 cttagctcagatggtaaggacaatgcataatacatgcacggtccggggttcgaaccctgcacacc 20671835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 28148524 - 28148460
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||| | |||| || ||||||||| ||||||||||| | |||||| |||||| ||||||    
T  28148524 cttagctcagttggtaagaataatgtataaaatatgcaaggttcaaggttcaaaccctagacacc 28148460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 35191873 - 35191817
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  |||||| ||||||||||||||||| | |||||||||||    
T  35191873 cttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccc 35191817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 42074126 - 42074162
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  42074126 aacaatgcataatatatgcaaggtctgaggttcgaac 42074162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 46226062 - 46226010
Alignment:
Q  160 acaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    |||||| |||||||||||||||||||  |||||||||| | ||||| ||||||    
T  46226062 acaatgcataatatatgcaaggtccggagttcgaaccccgaacaccaaaaaaa 46226010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 51614242 - 51614278
Alignment:
Q  169 aatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    |||||||||||||||||||||||||| || |||||||    
T  51614242 aatatatgcaaggtccgaggttcgaatcccggacacc 51614278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 52119381 - 52119437
Alignment:
Q  141 cttagctcagctagtaataacaatgtataatatatgcaaggtccgaggttcgaaccc 197  Q
    |||||||||| | ||||  |||||| |||||||||||||||| || |||||||||||    
T  52119381 cttagctcagttggtaaggacaatgcataatatatgcaaggttcggggttcgaaccc 52119437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 53207995 - 53208039
Alignment:
Q  161 caatgtataatatatgcaaggtccgaggttcgaaccctggacacc 205  Q
    ||||| ||||||||||||||||| | |||||||||||| ||||||    
T  53207995 caatgcataatatatgcaaggtctggggttcgaacccttgacacc 53208039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 22934 - 22987
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaaccctggacacctaaaaaa 212  Q
    ||||||| |||| |||||||||||||||||||| ||||| || ||| |||||||    
T  22934 aacaatgcataaaatatgcaaggtccgaggttcaaaccccggtcacttaaaaaa 22987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 134692 - 134656
Alignment:
Q  159 aacaatgtataatatatgcaaggtccgaggttcgaac 195  Q
    |||||||||||||||||||||||| || |||||||||    
T  134692 aacaatgtataatatatgcaaggttcggggttcgaac 134656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 102103 - 102135
Alignment:
Q  162 aatgtataatatatgcaaggtccgaggttcgaa 194  Q
    |||||||||||||||||||||||| ||||||||    
T  102103 aatgtataatatatgcaaggtccggggttcgaa 102135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University