View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_48 (Length: 399)
Name: NF17716_low_48
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 399
Target Start/End: Complemental strand, 46754130 - 46753750
Alignment:
| Q |
9 |
agagaagaactagagaataaaaatatcagttacatatggacaacaagaacaaaagcttagtgatacagccaaaatgcaggcaaagactaaaaagaataaa |
108 |
Q |
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| T |
46754130 |
agagaagaactaaagaataaaaatatcagttacatatggacaacaagaacaaaaacttagtgatatagccaaaatgtaggcaaagactaaaaagaataaa |
46754031 |
T |
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| Q |
109 |
agagaccggagctaaataaaaactcccaaatatgagagtgtgttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactact |
208 |
Q |
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| T |
46754030 |
agagaccggagctaaataaaaactcccaaatatgagagtgtgttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactact |
46753931 |
T |
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| Q |
209 |
agaagaattgaaacttaaccttttctacgagatgattaatggagtcccccttttgttgaaaaactctagtgttcctgtcacgccaaacatgtaattgaca |
308 |
Q |
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| T |
46753930 |
agaagaattgaaacttaaccttttctacgagatgattaatggagtcccccttttgttgaaaaactctagtgtt------------aacatgtaattgaca |
46753843 |
T |
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| Q |
309 |
gataaaaacaacaacaaaaatgtaaagaattatttacatactactttctgtaatctaaac--caaccaacaacaaaatctaatggagtatcat |
399 |
Q |
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| T |
46753842 |
gataaaaacaacaacaaatatgtaaagaattatttacatactacttcctgtaatctaaacaacaaccaacaacaaaatctaatggagtatcat |
46753750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 1680853 - 1680587
Alignment:
| Q |
11 |
agaagaactagagaataaaaatatcagttacatatggacaacaagaacaaaagcttagtgatacagccaaaatgcaggcaaagactaaaaagaataaaag |
110 |
Q |
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| T |
1680853 |
agaaggactagagaaaaataatatcagtcgcatctgaaaaccaagaacaaaaacttaatgatatagccaaaaatcatgcaaacactaaagagaataaaag |
1680754 |
T |
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| Q |
111 |
agaccggagctaaataaaaactcccaaatatgagagtgtgttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactag |
210 |
Q |
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| T |
1680753 |
aaatcgaaactaaataaaaactcctaaacatgagagtggcttaaaccaccaggtgtggtaagtgaaatcaaaactatgatgatttgtcttcaatcactag |
1680654 |
T |
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| Q |
211 |
aagaattgaaacttaaccttttctacgagatgattaatggagtcccccttttgttgaaaaactctag |
277 |
Q |
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| T |
1680653 |
aaggattggagtttaaccttttctatgagttgtttaatggagtaccctttttgttgaaaaactctag |
1680587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 26159664 - 26159739
Alignment:
| Q |
151 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaa |
226 |
Q |
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| T |
26159664 |
ttaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaa |
26159739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 44659590 - 44659467
Alignment:
| Q |
17 |
actagagaataaaaatatcagttacatatggacaacaagaacaaaagcttagtgatacagcc-aaaatgcaggcaaagactaaaaagaataaaagagacc |
115 |
Q |
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| T |
44659590 |
actagagaataaaaatatcagttacatctggataacaagaacaaaatcttagtaatacagccaaaaatgcatgcaaccattaaaacgaattaaagagacc |
44659491 |
T |
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| Q |
116 |
ggagctaaataaaaactcccaaat |
139 |
Q |
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| T |
44659490 |
gaagttaaataagaacttccaaat |
44659467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 295
Target Start/End: Complemental strand, 12251007 - 12250863
Alignment:
| Q |
151 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaaccttttctacgagatgattaatgg |
250 |
Q |
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||||||||||||||||| ||| |||||||||| || |||||||||| |||||| |||||||| |||| | |||||| || |||| || ||| | || | |
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| T |
12251007 |
ttaagccaccacatgtgataattaaaagcaaaattatgatgatttgctttcaaccactagaaggattggagcttaactttatctaaaagttgaatgattg |
12250908 |
T |
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| Q |
251 |
agtcccccttttgttgaaaaactctagtgttcctgtcacgccaaa |
295 |
Q |
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| | || |||||||||||||||||||| ||| |||||||||||| |
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| T |
12250907 |
aattcctcttttgttgaaaaactctagcattcttgtcacgccaaa |
12250863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 289
Target Start/End: Complemental strand, 26698181 - 26698043
Alignment:
| Q |
151 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaaccttttctacgagatgattaatgg |
250 |
Q |
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| T |
26698181 |
ttaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaattttatctatgagttggatgattg |
26698082 |
T |
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| Q |
251 |
agtcccccttttgttgaaaaactctagtgttcctgtcac |
289 |
Q |
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| T |
26698081 |
aattttccttttgttgaaaaactctagcattcctgtcac |
26698043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 55416999 - 55416932
Alignment:
| Q |
151 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattg |
218 |
Q |
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| T |
55416999 |
ttaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattg |
55416932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 48825355 - 48825408
Alignment:
| Q |
151 |
ttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaac |
204 |
Q |
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||||||||| ||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
48825355 |
ttaagccacgacatgtggtaattaaaaacaaaattaggatgatttgccttcaac |
48825408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 297
Target Start/End: Complemental strand, 30541994 - 30541846
Alignment:
| Q |
150 |
gttaagccaccacatgtggtaagaaaaagcaaaactaggatgatttgccttcaactactagaagaattgaaacttaaccttttctacgagatgattaatg |
249 |
Q |
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| T |
30541994 |
gttaagccaccgcatatgataattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaattttccctataagttgatgaata |
30541895 |
T |
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| Q |
250 |
gagtcccccttttgtt-gaaaaactctagtgttcctgtcacgccaaaca |
297 |
Q |
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| T |
30541894 |
gagtctcccttttgttataaaaactctagccttcttgtcatgccaaaca |
30541846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 23690603 - 23690639
Alignment:
| Q |
259 |
ttttgttgaaaaactctagtgttcctgtcacgccaaa |
295 |
Q |
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| T |
23690603 |
ttttgttgaaaaactctagtattcctatcacgccaaa |
23690639 |
T |
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