View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_49 (Length: 391)
Name: NF17716_low_49
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 6491723 - 6491983
Alignment:
| Q |
4 |
aaaacactggcacaatgaaacgcccaaacaacagcttagcatgatatatttaaagtgtcgtgagtattgagtacccataacaaacttgtgcaagaaggag |
103 |
Q |
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| T |
6491723 |
aaaacactggcacaatcaaacgcccaaacaacgacttaacatgatatatttggagtgtagtgaatattgagtactcataacaaacttgtgcaagaaggag |
6491822 |
T |
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| Q |
104 |
agagaaagttaagatcatagagagaatcatcagaaaaatttcaatcttctcttgcattctccattgtttgtaagagagagaaacttagcaaaaataacac |
203 |
Q |
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| T |
6491823 |
agagaaagttacgatcatagagagaatcatcagaaaaatttcaatcttctcttacattctccattatttgtaagagagagaaacatagcaaaaataatac |
6491922 |
T |
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| Q |
204 |
attaccgtttcaaattctttcttctgcaaaaatgtacttcacatattcatcatcatcttca |
264 |
Q |
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| T |
6491923 |
acaaccgtttcaaattctttcttctgcaaaaatgtacttcacatattcatcaccatcttca |
6491983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 6492552 - 6492802
Alignment:
| Q |
4 |
aaaacactggcacaatgaaacgcccaaacaacagcttagcatgatatatttaaagtgtcgtgagtattgagtacccataacaaacttgtgcaagaaggag |
103 |
Q |
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| T |
6492552 |
aaaacactggcacaatcaaacgcccaaacaacaacttagcatgatatatttggagtgtagtgagtactgagtacccataacaaacttgtgcaagaaggag |
6492651 |
T |
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| Q |
104 |
agagaaagttaagatcatagagagaatcatc-agaaaaatttcaatcttctcttgcattctccattgtttgtaagagagagaaacttagcaaaaataaca |
202 |
Q |
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| T |
6492652 |
agagaaagttacgatcatagagagaatcatcaaaaaaaatttcaatcttctcttgcattctccatt-tctgtaagagagagaaacttagcaaaaataaca |
6492750 |
T |
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| Q |
203 |
cattaccgtttcaaattctttcttctgcaaaaatgtacttcacatattcatc |
254 |
Q |
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| T |
6492751 |
cacaatcgtttcaaattctttcttctgcaaaaatgtacttcacatattcatc |
6492802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 6490140 - 6490331
Alignment:
| Q |
48 |
tatatttaaagtgtcgtgagtattgagtacccataacaaacttgtgcaagaaggagagagaaagttaagatcatagagagaatcatcagaaaaatttcaa |
147 |
Q |
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| T |
6490140 |
tatatttggagtgtagtgagtatcgagtgcccataacaaacttgtgcaagaaggagagagaaagttacaatcatagagagaat-atcaaaagaatttcaa |
6490238 |
T |
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| Q |
148 |
tcttctcttgcattctccattgtttgtaagagagagaaacttagcaaaaataacacattaccgtttcaaattctttcttctgcaaaaatgtac |
240 |
Q |
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| T |
6490239 |
tcttctcttgcattctccattgtttgtaagagagagaaacatagcaaaattaacacacaaccatttcaaattctttcttttgcaaaaatgtac |
6490331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 6492023 - 6492091
Alignment:
| Q |
305 |
cgttatttctgacgtctttctctctgtgaatttgcttttcaagttcttcttgtattgttgttccagaac |
373 |
Q |
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| T |
6492023 |
cgttatttcttacgtctttctctctgtgaatttgcttttcaagttcttcttgtattgttgttccagaac |
6492091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 6492832 - 6492900
Alignment:
| Q |
305 |
cgttatttctgacgtctttctctctgtgaatttgcttttcaagttcttcttgtattgttgttccagaac |
373 |
Q |
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| T |
6492832 |
cgttatttcttacgtctttctctctgtgaatttgcttttcaagttcttcttgtactgttgttccagaac |
6492900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 6490340 - 6490408
Alignment:
| Q |
305 |
cgttatttctgacgtctttctctctgtgaatttgcttttcaagttcttcttgtattgttgttccagaac |
373 |
Q |
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| T |
6490340 |
cgttatttcttacgtctttctctatgtgaatttgcttttcaagttctctttgtattgttgttccagaac |
6490408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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