View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_low_5 (Length: 620)
Name: NF17716_low_5
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 13 - 603
Target Start/End: Original strand, 10583501 - 10584090
Alignment:
| Q |
13 |
aatataaggttttcgtacctaagagaacaaaatgaacatatcacatcagtttattagttgaaaaagtaagaactagtagaacataagttagcttaaaatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583501 |
aatataaggttttcgtacctaagagaacaaaatgaacacatcacatcagtttattagttgaaaaagtaagaactagtagaacataagttagcttaaaatc |
10583600 |
T |
|
| Q |
113 |
tactttggtttgaaagtatatgcacattaatgactagataaatatttctattaaaaacataaaaataattcgacatgtagccacttacatcaagtgatat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583601 |
tactttggtttgaaagtatatgcacattaatgactagataaatatttctattaaaaacataaaaataattcgacatgtagccacttacatcaagtgatat |
10583700 |
T |
|
| Q |
213 |
ggtacttcgtgtccatatggcccctcaaccgaagctgttaccaccatatgaggcggaacagataaatcttctgttgcatcaccatcagtgattctttctc |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583701 |
ggtacttcatgtccatatggcccctcaaccgaagctgttaccaccatatgaggcggaacagataaatcttctgttgcatcaccatcagtgattctttctc |
10583800 |
T |
|
| Q |
313 |
ttaaccccccggtccattttccaagaaccttaatgagaacagcaatgtgattttttccatccaaagggctagaagaaacactgaatggatgccactgaag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583801 |
ttaaccccccggtccattttccaagaaccttaatgagaacagcaatgtgattttttccatccaaagggctagaagaaacactgaatggatgccactgaag |
10583900 |
T |
|
| Q |
413 |
ccacgataattcccgaacttgaaggaaaatgaagcttagggcattgtatctcaaatctacattttcagaagatatattgtcactgttatatatggtaatg |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583901 |
ccacgataattcccgaacttgaaggaaaatgaagcttagggcattgtatctcaaatctacattttcagaagatatattgtcactgttatatatggtaatg |
10584000 |
T |
|
| Q |
513 |
atatgcaaatttatgcacnnnnnnnngctacaaataagtatacttactttgtggttttgacaggaccatttccacagtgccacaaggaagg |
603 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10584001 |
atatgcaaatttatgca-aaaaaaaaggtacaaataagtatacttactttgtggttttgacaggaccatttccacagtgccacaaggaagg |
10584090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University