View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_61 (Length: 322)
Name: NF17716_low_61
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_61 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 10154612 - 10154306
Alignment:
| Q |
16 |
gaatgatccgccattcaactttatgattcacacaagtccactgcatggcgatgagtcagagttggcatacacacattggtttatacagatagtacctcaa |
115 |
Q |
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| T |
10154612 |
gaatgatccgccattcaactttatgattcacacaagtccactgcatggcgatgagtcagagttggcatacacacattggtttatacagatagtacctcaa |
10154513 |
T |
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| Q |
116 |
cttatcgggacagcgggtttcgagctcgcaactggatgttacataaatccagttttccctgaggatgctgcaaatattctaagagaagtgaatgtttaag |
215 |
Q |
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| T |
10154512 |
cttatcgggacagcgggtttcgagctcgcaactggatgttacataaatccagttttccctgaggatgctgcaaagattctaagagaagtgaatgtttaag |
10154413 |
T |
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| Q |
216 |
agtcagaacaaaaaaggtagaaacatactgctaacctagggcctgtttggaaggaactacagtttgaggtcatcaattactgacataaatatttgtgaaa |
315 |
Q |
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| T |
10154412 |
agtcagaacaaaaaaggtagaaacatactgttaacctagggcctgtttggaaggaactacagtttgaggtcatcaattactgacataaatatttgggaaa |
10154313 |
T |
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| Q |
316 |
ctgtttg |
322 |
Q |
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| T |
10154312 |
ctgtttg |
10154306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 10177973 - 10178163
Alignment:
| Q |
21 |
atccgccattcaactttatgattcacacaagtccactgcatggcgatgagtcagagttggcatacacacattggtttatacagatagtacctcaacttat |
120 |
Q |
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| T |
10177973 |
atccgccatacaactttatgattcacactagtccactgcgtggtgatgggtcagagctggcatacagtcattggtttatacagataatacctcagctgat |
10178072 |
T |
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| Q |
121 |
cgggacagcgggtttcgagctcgcaactggatgttacataaatccagttttccctgaggatgctgcaaatattctaagagaagtgaatgtt |
211 |
Q |
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| T |
10178073 |
tccgacaactggttttgagcttggaactgggtctcacatcaatcctgttttgcctgaggatgctgcaaagattctaagagaagtgattgtt |
10178163 |
T |
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