View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_low_65 (Length: 305)
Name: NF17716_low_65
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_65 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 33830543 - 33830821
Alignment:
| Q |
16 |
cagtttattcaaattttgctacgtcatagccgctatttgacaacacttgcacaaaattgtgtagatggaaaaatagcgatttgttaaaactccgctatat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33830543 |
cagtttattcaaattttgctacgtcatagccgctatttgacaacacttgcacaaaattgtgtagatggaaaaatagcgatttgttaaaactccgctatat |
33830642 |
T |
|
| Q |
116 |
atgttgcagcattgtagcggcactacagccgctatttaacaacactataaccagcacaacgtgcagaacatgttcatataaagaaaatgggattttatgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33830643 |
atgttgcagcattgtagcggcactacagccgctatttaacaacactacaaccagcacaacgtgcagaacatgttcatataaagaaaatgggattttatga |
33830742 |
T |
|
| Q |
216 |
tcacaaatgtttcactagcacccgaaaactaacataccttttgaacccgagcaatcagccttgtcaatctactcttcat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33830743 |
tcacaaatgtttcactagcacccgaaaactaacataccttttgaacccgagcaatcagccttgtcattctactcttcat |
33830821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 33892706 - 33892984
Alignment:
| Q |
16 |
cagtttattcaaattttgctacgtcatagccgctatttgacaacacttgcacaaaattgtgtagatggaaaaatagcgatttgttaaaactccgctatat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33892706 |
cagtttattcaaattttgctacgtcatagccgctatttgacaacacttgcacaaaattgtgtagatggaaaaatagcgatttgttaaaactccgctatat |
33892805 |
T |
|
| Q |
116 |
atgttgcagcattgtagcggcactacagccgctatttaacaacactataaccagcacaacgtgcagaacatgttcatataaagaaaatgggattttatgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33892806 |
atgttgcagcattgtagcggcactacagccgctatttaacaacactacaaccagcacaacgtgcagaacatgttcatataaagaaaatgggattttatga |
33892905 |
T |
|
| Q |
216 |
tcacaaatgtttcactagcacccgaaaactaacataccttttgaacccgagcaatcagccttgtcaatctactcttcat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33892906 |
tcacaaatgtttcactagcacccgaaaactaacataccttttgaacccgagcaatcagccttgtcattctactcttcat |
33892984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University