View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_66 (Length: 305)

Name: NF17716_low_66
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_66
NF17716_low_66
[»] chr4 (1 HSPs)
chr4 (20-305)||(1081150-1081435)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 1081150 - 1081435
Alignment:
Q  20 agatttagatttagatttagagcaacaaaccctaactttattcatcttattttgtttcttttcctttctaccaaattgcatccatgaagatccattacca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1081150 agatttagatttagatttagagcaacaaaccctaactttattcatcttattttgtttcttttcctttctaccaaattgcatccatgaagatccattacca 1081249  T
Q  120 ccaataacaccaacagcagtagtagcagccattcttaaaatcacaaattctcaaaagcccnnnnnnnccctttgttataaagatccaaactttgaagtat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  1081250 ccaataacaccaacagcagtagtagcagccattcttaaaatcacaaattctcaaaagcccaaaaaaaccctttgttataaagatccaaactttgaagtat 1081349  T
Q  220 ttaacaaaaattaacaatgacccagaagagtttttgttgtaaaggaccaaactttaagataagaacacagattcacaatgacccag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1081350 ttaacaaaaattaacaatgacccagaagagtttttgttgtaaaggaccaaactttaagataagaacacagattcacaatgacccag 1081435  T

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