View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_7 (Length: 599)

Name: NF17716_low_7
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_7
NF17716_low_7
[»] chr3 (7 HSPs)
chr3 (17-592)||(42787305-42787879)
chr3 (173-245)||(10841732-10841805)
chr3 (162-239)||(1086550-1086628)
chr3 (148-233)||(2128409-2128494)
chr3 (148-198)||(36571382-36571432)
chr3 (189-286)||(44382860-44382958)
chr3 (161-245)||(4980308-4980393)
[»] chr4 (28 HSPs)
chr4 (143-271)||(2253956-2254084)
chr4 (143-272)||(19934646-19934776)
chr4 (143-272)||(54164821-54164951)
chr4 (143-269)||(14351274-14351401)
chr4 (143-272)||(19934640-19934770)
chr4 (137-286)||(38381972-38382122)
chr4 (143-272)||(54164815-54164945)
chr4 (152-251)||(47397909-47398009)
chr4 (161-239)||(12596696-12596775)
chr4 (146-272)||(31280341-31280468)
chr4 (146-239)||(5535719-5535812)
chr4 (143-272)||(29006837-29006967)
chr4 (148-272)||(37255690-37255814)
chr4 (171-239)||(42013187-42013256)
chr4 (149-272)||(11796593-11796716)
chr4 (172-239)||(25856041-25856109)
chr4 (138-285)||(29006830-29006978)
chr4 (141-219)||(30206533-30206613)
chr4 (149-266)||(6462726-6462844)
chr4 (161-266)||(20598277-20598383)
chr4 (150-266)||(2253968-2254084)
chr4 (172-272)||(6462743-6462844)
chr4 (148-193)||(9993532-9993577)
chr4 (173-245)||(31262626-31262699)
chr4 (172-272)||(31933678-31933779)
chr4 (171-239)||(34827513-34827582)
chr4 (172-239)||(20542834-20542902)
chr4 (199-231)||(30538261-30538293)
[»] chr2 (14 HSPs)
chr2 (145-287)||(29765667-29765811)
chr2 (147-239)||(41824267-41824359)
chr2 (173-239)||(10041574-10041641)
chr2 (173-239)||(10099584-10099651)
chr2 (135-286)||(25270850-25271002)
chr2 (171-230)||(32473501-32473561)
chr2 (143-285)||(1961311-1961454)
chr2 (150-272)||(36547350-36547473)
chr2 (161-266)||(27881257-27881363)
chr2 (173-286)||(41056882-41056996)
chr2 (141-198)||(15900302-15900359)
chr2 (143-239)||(44089428-44089525)
chr2 (199-251)||(6456656-6456708)
chr2 (135-286)||(13333441-13333593)
[»] chr8 (9 HSPs)
chr8 (172-289)||(7410556-7410674)
chr8 (171-239)||(14599671-14599740)
chr8 (143-239)||(24820339-24820435)
chr8 (199-287)||(35781220-35781308)
chr8 (161-239)||(24418922-24419000)
chr8 (172-238)||(28882695-28882762)
chr8 (148-245)||(24820305-24820402)
chr8 (146-245)||(36307997-36308096)
chr8 (143-230)||(44319579-44319667)
[»] chr7 (14 HSPs)
chr7 (171-233)||(18654593-18654656)
chr7 (172-272)||(21387584-21387685)
chr7 (172-233)||(27163212-27163274)
chr7 (174-238)||(6250642-6250707)
chr7 (172-251)||(30486613-30486693)
chr7 (174-238)||(6182958-6183023)
chr7 (173-233)||(19688131-19688192)
chr7 (150-199)||(24353809-24353858)
chr7 (145-198)||(26477244-26477297)
chr7 (145-198)||(26553684-26553737)
chr7 (143-239)||(31319557-31319654)
chr7 (142-214)||(36502312-36502385)
chr7 (172-239)||(8169138-8169205)
chr7 (148-196)||(44819671-44819719)
[»] chr5 (13 HSPs)
chr5 (209-266)||(25713767-25713824)
chr5 (143-245)||(1098663-1098765)
chr5 (138-239)||(4082779-4082881)
chr5 (148-198)||(27895904-27895954)
chr5 (174-233)||(36409685-36409745)
chr5 (172-245)||(12295707-12295781)
chr5 (172-272)||(1098659-1098759)
chr5 (187-239)||(13356178-13356231)
chr5 (139-239)||(17967356-17967457)
chr5 (161-245)||(25408563-25408648)
chr5 (163-230)||(566315-566383)
chr5 (172-239)||(2673888-2673956)
chr5 (172-239)||(15965997-15966065)
[»] chr1 (21 HSPs)
chr1 (171-239)||(36163988-36164056)
chr1 (172-239)||(19175629-19175697)
chr1 (143-193)||(32796834-32796884)
chr1 (183-239)||(24478706-24478763)
chr1 (148-196)||(27939194-27939242)
chr1 (172-239)||(45239022-45239090)
chr1 (138-198)||(50503180-50503240)
chr1 (172-238)||(33930768-33930835)
chr1 (148-194)||(3906848-3906894)
chr1 (218-272)||(15439870-15439924)
chr1 (143-272)||(34953904-34954034)
chr1 (203-233)||(44673933-44673963)
chr1 (141-198)||(6156634-6156691)
chr1 (173-233)||(23394737-23394798)
chr1 (171-239)||(31909790-31909859)
chr1 (172-272)||(52112884-52112984)
chr1 (172-239)||(4682968-4683036)
chr1 (162-198)||(27685308-27685344)
chr1 (152-196)||(44673897-44673941)
chr1 (173-232)||(46829920-46829980)
chr1 (143-286)||(46906863-46907007)
[»] scaffold0635 (1 HSPs)
scaffold0635 (173-239)||(5429-5496)
[»] scaffold1266 (1 HSPs)
scaffold1266 (172-245)||(161-235)
[»] chr6 (4 HSPs)
chr6 (161-239)||(3012401-3012480)
chr6 (172-272)||(17773509-17773610)
chr6 (173-233)||(29168532-29168593)
chr6 (150-245)||(13462968-13463063)
[»] scaffold0263 (1 HSPs)
scaffold0263 (172-233)||(19840-19902)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 592
Target Start/End: Complemental strand, 42787879 - 42787305
Alignment:
Q  17 cataaaaagcataccagcttaggttttctggcagcatctgtctctgagctttgtgttcttaattcgtcctagctagttactcaggttcaagtttattttc 116  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42787879 cataaaaaacataccagcttaggttttctggcagcatgtgtctctgagctttgtgttcttaattcgtcctagctagttactcaggttcaagtttattttc 42787780  T
Q  117 tattctgtgtcatccaaaatgcatcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgttgtggtttattatataga 216  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||    
T  42787779 tattctgtatcatccaaaatacatcttccgatcactattataaacaaaaattcattttttaggttcattcaataaatgatgttgtggtttattatataga 42787680  T
Q  217 ccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtatagtctttagtaaataaatatataaccataa 316  Q
    | ||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||    
T  42787679 ctacatatatcatttattgaatggatctacaaaattgatttttgcttataatagtgaccagatggtgtatagt-tttagtaaataaatatataaccataa 42787581  T
Q  317 taacnnnnnnngttatttttcaaaatattttggtatgattaccgtgacaattctatatttggtatggctatgtgttttacaaagttagtgttttttgtct 416  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42787580 taactttttttgttatttttcaaaatattttggtatgattaccgtgacaattctatatttggtatggctatgtgttttacaaagttagtgttttttgtct 42787481  T
Q  417 tcattccnnnnnnnnngaagttagtgttttctttacttgatgtttcatgccagcaattttcctttatatatctgataatatgttgaaactaatatacctt 516  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42787480 tcattccaaaaaaaaaaaagttagtgttttctttacttgatgtttcatgccagcaattttcctttatatatctaataatatgttgaaactaatatacctt 42787381  T
Q  517 cgtgtcatcattctgttagtagttcaggtcttctcatttttctggtgtcttaaaatttatttgaaaatattcttgg 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42787380 cgtgtcatcattctgttagtagttcaggtcttctcatttttctggtgtcttaaaatttatttgaaaatattattgg 42787305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 10841805 - 10841732
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    |||| ||||||||||||||||||||| ||| || || ||||||||||||||| | ||||||| ||||| |||||    
T  10841805 tttttgatttatttaataaatgatgtatgtagtctaatatatagaccacatacaacatttattgaatgaatcta 10841732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 1086628 - 1086550
Alignment:
Q  162 aaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||  |||||||||| ||| ||||||||||||   |||| ||||||||| |||||||| ||||||||| |||||    
T  1086628 aaaaattcactttttagattcattcaataaatgatgtacatggtctattatatataccacatacatcatttattgaatg 1086550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 2128494 - 2128409
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    |||||||||| | ||||||||| | ||||||||| ||| |||||||||||| |||||| || ||||||||| ||||  |||||||||    
T  2128494 tcactattataagcaaaaattcatgttttagattcattcaataaatgatgtatgtggtcta-tatatagactacatgcatcatttat 2128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 36571382 - 36571432
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatgatgt 198  Q
    |||||||||| | ||||| || |||||||||||||||| ||||||||||||    
T  36571382 tcactattataagcaaaagtttcttttttagatttattcaataaatgatgt 36571432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 44382860 - 44382958
Alignment:
Q  189 taaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtat 286  Q
    |||||||||| |||||||||| ||| |||| ||||||||||||||  ||||| ||||| ||  |||| ||||| ||||| ||||| | |||| ||||||    
T  44382860 taaatgatgtatgtggtttataatacagactacatatatcatttaatgaatgtatctaaaacgttgatttttgcttataatagtgaccagatagtgtat 44382958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 4980393 - 4980308
Alignment:
Q  161 caaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    ||||||||| | ||||||||| ||| |||||||||||| ||| || | |  ||||||| ||||||||||||||| ||||| |||||    
T  4980393 caaaaattcatattttagattcattcaataaatgatgtatgtagtctttattatagacaacatatatcatttattgaatgaatcta 4980308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 2253956 - 2254084
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    |||||||| |||||| ||||||||||  ||||||||||||||| | |||||||||| |||||| || ||||||||| ||||||||||||||| ||||| |    
T  2253956 tccgatcattattataaacaaaaattaattttttagatttattcattaaatgatgtatgtggtcta-tatatagactacatatatcatttattgaatgaa 2254054  T
Q  242 tctacaaaattgacttttgtttatagtagt 271  Q
    | || |||||  ||||||||||||| ||||    
T  2254055 tttaaaaaataaacttttgtttataatagt 2254084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 19934776 - 19934646
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    ||||||||||||||| | |||||||   ||||||||||| ||| |||||||||||| ||||||  |||| |||||||||||| ||||||||| ||||| |    
T  19934776 tccgatcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgtggtccattaaatagaccacatacatcatttattgaatgaa 19934677  T
Q  242 tctacaaaattgacttttgtttatagtagtg 272  Q
    |||| ||| | || ||||| ||||| |||||    
T  19934676 tctaaaaagtggaattttgcttataatagtg 19934646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 54164951 - 54164821
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    |||| |||||||||| | |||||||   ||||||||||| ||| |||||||||||| ||||||  |||| |||||||||||| ||||||||| ||||| |    
T  54164951 tccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgtggtccattaaatagaccacatacatcatttattgaatgaa 54164852  T
Q  242 tctacaaaattgacttttgtttatagtagtg 272  Q
    |||| ||| | || ||||| ||||| |||||    
T  54164851 tctaaaaagtggaattttgcttataatagtg 54164821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 269
Target Start/End: Complemental strand, 14351401 - 14351274
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    ||||||||||||||| || |||||||| ||| |||| || ||| |||||||||| | |||| |  |  |||||||||||||| ||||||||| ||||| |    
T  14351401 tccgatcactattataaataaaaattcatttgttaggttcattcaataaatgatatatgtgatcaacaatatagaccacatacatcatttattgaatgaa 14351302  T
Q  242 tctacaaaattgacttttgtttatagta 269  Q
     ||| ||||| |||||||||||| ||||    
T  14351301 gctataaaatagacttttgtttaaagta 14351274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 272
Target Start/End: Original strand, 19934640 - 19934770
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    |||| |||||||||| | ||||| | |  |||||||||| ||| |||||||||||| |||||| ||||  || ||||||||| ||||||||| ||||| |    
T  19934640 tccggtcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtctatttaatggaccacatacatcatttattgaatgaa 19934739  T
Q  242 tctacaaaattgacttttgtttatagtagtg 272  Q
    |||| ||||| || ||||| ||||| |||||    
T  19934740 tctaaaaaatagatttttgcttataatagtg 19934770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 38381972 - 38382122
Alignment:
Q  137 gcatcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcg 235  Q
    ||||| |||| |||||||||| | ||||||||    ||||||||| ||| | |||||||||| |||||||||| ||| |||| ||||| ||||||||  |    
T  38381972 gcatcctccggtcactattataagcaaaaatttacattttagattcattgattaaatgatgtatgtggtttataatacagactacatacatcatttaatg 38382071  T
Q  236 aatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtat 286  Q
    |||| ||||| ||  |||| ||||| ||||| ||||| | |||||||||||    
T  38382072 aatgtatctaaaacgttgatttttgcttataatagtgaccagatggtgtat 38382122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 272
Target Start/End: Original strand, 54164815 - 54164945
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    |||| |||||||||| | ||||| | |  |||||||||| ||| |||||||||||| |||||| ||||  || ||||||||| ||||||||| ||||| |    
T  54164815 tccggtcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtctatttaatggaccacatacatcatttattgaatgaa 54164914  T
Q  242 tctacaaaattgacttttgtttatagtagtg 272  Q
    |||| ||||| || ||||| ||||| |||||    
T  54164915 tctaaaaaatagatttttgcttataatagtg 54164945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 47398009 - 47397909
Alignment:
Q  152 tattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaa 250  Q
    |||||| ||||||  ||| |||||||| |||||| |||||||||| | |||||| ||||||||||| ||||||||| |||||| ||||  ||||| ||||    
T  47398009 tattataaacaaaccttcattttttaggtttattcaataaatgatatatgtggtctattatatagatcacatatattatttattgaataaatctaaaaaa 47397910  T
Q  251 t 251  Q
    |    
T  47397909 t 47397909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 12596696 - 12596775
Alignment:
Q  161 caaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||  ||||||| ||| ||||||||||| |||| |||||  ||||| |||||||||||||||||||||| |||||    
T  12596696 caaaaatttattttttaaattcatttaataaataatgtatgtggactattaaatagaccacatatatcatttattgaatg 12596775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 31280468 - 31280341
Alignment:
Q  146 gatcactattattaacaaaaattccttttttagatttatttaataaatgatg-ttgtggtttattatatagaccacatatatcatttatcgaatggatct 244  Q
    ||||| |||||| ||||||||||  |||||||| || |||||||||||||||  ||| || |||||| ||| |||||| || ||||||| ||||| ||||    
T  31280468 gatcattattataaacaaaaatttattttttaggttcatttaataaatgatgaatgtagtctattatgtaggccacatgtaccatttattgaatgaatct 31280369  T
Q  245 acaaaattgacttttgtttatagtagtg 272  Q
    | ||||| |  ||||| ||||| |||||    
T  31280368 aaaaaatggtgttttgcttataatagtg 31280341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 5535719 - 5535812
Alignment:
Q  146 gatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||| ||| | |||||| || ||||||||||| ||| |||||||||||| ||| ||||| ||||||||||||||| |||| |||| |||||    
T  5535719 gatcactagtataagcaaaaactcattttttagattcattcaataaatgatgtatgtagttta-tatatagaccacatacatcagttattgaatg 5535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 272
Target Start/End: Original strand, 29006837 - 29006967
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    |||| |||||||||| | |||||||   ||||||||||| ||| |||||||||||| |||| |  |||| |||||||||||| ||||||||| ||||| |    
T  29006837 tccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgtgatccattaaatagaccacatacatcatttattgaatgaa 29006936  T
Q  242 tctacaaaattgacttttgtttatagtagtg 272  Q
    | || ||| | || ||||| ||||| |||||    
T  29006937 tttaaaaagtggaattttgcttataatagtg 29006967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 37255814 - 37255690
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctac 246  Q
    |||||||||| | ||||| |||  |||||| ||| ||| ||||||| |||| ||| |||||| |||||||||||||| ||||||||| ||||| |||||     
T  37255814 tcactattataagcaaaagttcactttttaaattcattcaataaattatgtatgtagtttat-atatagaccacatacatcatttattgaatgaatctaa 37255716  T
Q  247 aaaattgacttttgtttatagtagtg 272  Q
    ||||   ||||||| ||||| |||||    
T  37255715 aaaaccaacttttgcttataatagtg 37255690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 42013256 - 42013187
Alignment:
Q  171 ttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||| |||||| ||| |||||||| |||||||||| |||||||||||||| |||||| || |||||    
T  42013256 ttttttaggtttattcaattaatgatgtatgtggtttataatatagaccacatacatcattaattgaatg 42013187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 11796716 - 11796593
Alignment:
Q  149 cactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctaca 247  Q
    ||||||||| | |||||||||  |||||||||||||| |||||||||||| |||  | || |||||| ||||||||||||||| || ||||| ||| | |    
T  11796716 cactattataagcaaaaattcactttttagatttattcaataaatgatgtatgtaatcta-tatataaaccacatatatcattcattgaatgaatcgaaa 11796618  T
Q  248 aaattgacttttgtttatagtagtg 272  Q
    || |  ||||||| ||||| |||||    
T  11796617 aagtcaacttttgcttataatagtg 11796593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 25856041 - 25856109
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||| ||||||| |||||||| ||||||| || |||||||||||||| |||||| || |||||    
T  25856041 tttttagattcatttaatcaatgatgtatgtggttcataatatagaccacatacatcattaattgaatg 25856109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 285
Target Start/End: Complemental strand, 29006978 - 29006830
Alignment:
Q  138 catcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcga 236  Q
    |||| |||| |||||||||| | ||||| | |  |||||| ||| ||| |||||||||||| |||||| ||||  || || |||||| ||||||||| ||    
T  29006978 catcctccggtcactattataagcaaaattccactttttaaattcattcaataaatgatgtatgtggtctatttaatggatcacatacatcatttattga 29006879  T
Q  237 atggatctacaaaattgacttttgtttatagtagtgccgagatggtgta 285  Q
    ||| ||||| ||||| || ||||| ||||| ||||| |  |||||||||    
T  29006878 atgaatctaaaaaatagatttttgcttataatagtgaccggatggtgta 29006830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 30206613 - 30206533
Alignment:
Q  141 cttccgatcactattattaacaaaaattcctttttt-agatttatttaataaatgatgt-tgtggtttattatatagacca 219  Q
    |||||| |||||||||| |||||| ||||||||||| ||||| ||| ||||| |||||| | |||||||| ||||||||||    
T  30206613 cttccggtcactattataaacaaatattccttttttcagattcattgaataattgatgtatctggtttataatatagacca 30206533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 6462844 - 6462726
Alignment:
Q  149 cactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctaca 247  Q
    ||||||||| ||||||| ||  ||||||||||| ||| |||||||||||| |||| | ||||  || || |||||| ||||||||| ||||| | ||| |    
T  6462844 cactattataaacaaaattttattttttagattcattcaataaatgatgtatgtgatctatttaatggatcacatacatcatttattgaatgaacctaaa 6462745  T
Q  248 aaattgacttttgtttata 266  Q
    || | || |||||||||||    
T  6462744 aagtagatttttgtttata 6462726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 20598277 - 20598383
Alignment:
Q  161 caaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgactttt 259  Q
    ||||||||| | ||||||||  ||| |||||||||||| | | || ||  ||| |||||||||||||||||||| ||||| ||||| || || || ||||    
T  20598277 caaaaattcatgttttagatacattcaataaatgatgtatattgtctacaataaagaccacatatatcatttattgaatgaatctaaaacatggattttt 20598376  T
Q  260 gtttata 266  Q
    |||||||    
T  20598377 gtttata 20598383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 2254084 - 2253968
Alignment:
Q  150 actattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaa 248  Q
    |||||||| ||||||| ||  ||||||| ||| ||| |||||||||| | ||| || ||| |||||||||||||| ||||||||  ||||  ||||| ||    
T  2254084 actattataaacaaaagtttattttttaaattcattcaataaatgatatatgtagtctat-atatagaccacatacatcatttaatgaataaatctaaaa 2253986  T
Q  249 aattgacttttgtttata 266  Q
    |||| | |||||||||||    
T  2253985 aattaatttttgtttata 2253968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 6462743 - 6462844
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtag 270  Q
    ||||||| || ||| |||||||||||| |||| |  |||| ||||| |||||| ||||||||| ||||| ||||| |||||  | ||||||||||| |||    
T  6462743 tttttaggttcattcaataaatgatgtatgtgatccattaaatagatcacatacatcatttattgaatgaatctaaaaaataaaattttgtttataatag 6462842  T
Q  271 tg 272  Q
    ||    
T  6462843 tg 6462844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 9993577 - 9993532
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaat 193  Q
    |||||||||| |||||||||||  |||||||||||||| |||||||    
T  9993577 tcactattataaacaaaaattcactttttagatttattcaataaat 9993532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 31262626 - 31262699
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    ||||| ||| |||||||||||||||| |||| | |||  || |||| ||||||||||||||||||||| |||||    
T  31262626 ttttatattaatttaataaatgatgtatgtgatctatattaaagactacatatatcatttatcgaatgaatcta 31262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 31933678 - 31933779
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtag 270  Q
    |||||||||| |||||||||||||||| |||||||||   | ||||||||||| ||| |||||  |||| ||||| ||| | ||  |||| |||||||||    
T  31933678 tttttagattcatttaataaatgatgtctgtggtttacattgtagaccacatacatcgtttattaaatgaatctaaaaagtagagatttgcttatagtag 31933777  T
Q  271 tg 272  Q
    ||    
T  31933778 tg 31933779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 34827582 - 34827513
Alignment:
Q  171 ttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||||| ||| ||| |||||||| |||||||||| |||| |||||||||||| ||| || |||||    
T  34827582 ttttttagattcattcaattaatgatgtatgtggtttatgatattgaccacatatattattaattgaatg 34827513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 20542834 - 20542902
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||| ||| ||| |||||||| ||||| |||| |||||||||||||| |||||| || |||||    
T  20542834 tttttagattcattcaattaatgatgtatgtgggttataatatagaccacatacatcattaattgaatg 20542902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 30538261 - 30538293
Alignment:
Q  199 tgtggtttattatatagaccacatatatcattt 231  Q
    ||||||||||||| |||||||||||||||||||    
T  30538261 tgtggtttattatgtagaccacatatatcattt 30538293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 29765667 - 29765811
Alignment:
Q  145 cgatcactattattaacaaaaattccttttttagatttattt-aataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggat 242  Q
    ||||||||||||| | |||||||   ||| |||||||||||| |||||||||| | | |||||||| ||||||||| ||||||||| ||||  |||| ||    
T  29765667 cgatcactattataagcaaaaatatatttcttagatttatttgaataaatgatatatatggtttataatatagaccgcatatatcacttattcaatgaat 29765766  T
Q  243 ctacaaaattgacttttgtttatagtagtgccgagatggtgtata 287  Q
    ||| ||| |||| ||||| ||||| | ||| ||||||||||||||    
T  29765767 ctaaaaagttgatttttggttataattgtgacgagatggtgtata 29765811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 41824267 - 41824359
Alignment:
Q  147 atcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||||| | ||||||||| ||||||||||| ||| ||||||| |||| ||| ||||| ||||||||||||||| ||||||||| |||||    
T  41824267 atcactattataagcaaaaattcattttttagattcattcaataaattatgtatgtagttta-tatatagaccacatacatcatttattgaatg 41824359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 10041574 - 10041641
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||| ||||||| |||||||| |||||||||| |||||||||||||| |||||| || |||||    
T  10041574 ttttagattcatttaattaatgatgtatgtggtttataatatagaccacatacatcattaattgaatg 10041641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 10099584 - 10099651
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||| || ||||||| |||||||| |||||||||| ||||||||||||||||||||| || |||||    
T  10099584 ttttaggttcatttaattaatgatgtatgtggtttataatatagaccacatatatcattaattgaatg 10099651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 286
Target Start/End: Complemental strand, 25271002 - 25270850
Alignment:
Q  135 atgcatcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    ||||||| |||| |||||||||| | |||||||     ||||||||| ||| | |||||||||| || ||||||| ||| |||| ||||| ||||||||     
T  25271002 atgcatcctccggtcactattataagcaaaaatctacattttagattcattcattaaatgatgtatgcggtttataatacagactacatacatcatttaa 25270903  T
Q  234 cgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtat 286  Q
     ||||| ||||| ||  |||| ||||| ||||| ||||| | |||||||||||    
T  25270902 tgaatgtatctaaaacgttgatttttgcttataatagtgaccagatggtgtat 25270850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 32473501 - 32473561
Alignment:
Q  171 ttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatt 230  Q
    ||||||||||| ||| ||| |||||||| ||||||| || |||||||||||||||||||||    
T  32473501 ttttttagattcattcaattaatgatgtatgtggttcataatatagaccacatatatcatt 32473561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 285
Target Start/End: Original strand, 1961311 - 1961454
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    ||||||||||||||| | ||||||||    |||||||||| |||||| |||||||| | |||| | |  ||||||||||||| ||||||||  ||||| |    
T  1961311 tccgatcactattataagcaaaaatttacattttagatttgtttaattaatgatgtatatggtctttattatagaccacatacatcatttaatgaatgaa 1961410  T
Q  242 tctacaaaattgacttttgtttatagtagtgccgagatggtgta 285  Q
    |||| ||  |||| ||||| ||||| ||||| |  |||||||||    
T  1961411 tctaaaatgttgatttttgcttataatagtgacccgatggtgta 1961454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 36547350 - 36547473
Alignment:
Q  150 actattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaa 248  Q
    |||||||| ||||||||||    ||||| ||| |||||||||||||||| |||| | | | ||||||| |||||| ||||||||| ||||| | || |||    
T  36547350 actattataaacaaaaattgacattttaaattcatttaataaatgatgtatgtgatctttaatatagatcacatacatcatttattgaatgaacctgcaa 36547449  T
Q  249 aattgacttttgtttatagtagtg 272  Q
     ||| | ||||||||||| |||||    
T  36547450 tattaaattttgtttataatagtg 36547473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 27881257 - 27881363
Alignment:
Q  161 caaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgactttt 259  Q
    ||||||||| | ||||| ||| ||| |||||||||||| ||| |||||  ||| | |||||||||||||||||| ||||| | ||| || ||||| ||||    
T  27881257 caaaaattcatgttttatattcattcaataaatgatgtatgttgtttacaataaataccacatatatcatttattgaatgaacctaaaacattgattttt 27881356  T
Q  260 gtttata 266  Q
    | |||||    
T  27881357 gcttata 27881363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 41056996 - 41056882
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagt 271  Q
    ||||||||| ||| | |||||||||| || ||||||| ||| |||| ||||| ||||||||  ||||| ||||| || ||||| ||||| ||||| ||||    
T  41056996 ttttagattcattcattaaatgatgtatgcggtttataatacagactacatacatcatttaatgaatgtatctaaaacattgatttttgcttataatagt 41056897  T
Q  272 gccgagatggtgtat 286  Q
    |   |||||||||||    
T  41056896 gatcagatggtgtat 41056882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 15900359 - 15900302
Alignment:
Q  141 cttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt 198  Q
    |||| |||||||||||| || |||||||  | ||||| ||||||||||||||||||||    
T  15900359 cttctgatcactattataaataaaaattaatattttacatttatttaataaatgatgt 15900302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 44089428 - 44089525
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||||||||| | ||||||| | | ||||| ||| ||| ||||||||||||   |||| ||| |||||||||||||| ||||| ||| |||||    
T  44089428 tccgatcactattataagcaaaaatacatcttttatattcattgaataaatgatgtacatggtctataatatagaccacatacatcatgtattgaatg 44089525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 6456656 - 6456708
Alignment:
Q  199 tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaat 251  Q
    |||||||||| ||||||| |||||   |||||||||||||| |||||||||||    
T  6456656 tgtggtttataatatagaacacatgcttcatttatcgaatgaatctacaaaat 6456708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 286
Target Start/End: Complemental strand, 13333593 - 13333441
Alignment:
Q  135 atgcatcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    |||||||||||| |||||||||| | |||||||     ||||||||| ||| | |||||||||| || ||||||| ||| | || ||||| ||||||||     
T  13333593 atgcatcttccggtcactattataagcaaaaatctacattttagattcattgattaaatgatgtatgcggtttataatacaaactacatacatcatttaa 13333494  T
Q  234 cgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtat 286  Q
     ||||| ||||| ||  |||| ||||| ||||| |||||   |||||||||||    
T  13333493 tgaatgtatctaaaacgttgatttttgcttataatagtgatcagatggtgtat 13333441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 7410674 - 7410556
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtag 270  Q
    ||||||| |||||| |||||||||||| ||||||  |||| |||||||||||||||||||||| ||||| |||||  ||||| | ||||| ||||| |||    
T  7410674 tttttaggtttattaaataaatgatgtatgtggtccattaaatagaccacatatatcatttattgaatgaatctaataaattaaattttgcttataatag 7410575  T
Q  271 tgccgagatggtgtatagt 289  Q
    || |  || ||||||||||    
T  7410574 tgactggagggtgtatagt 7410556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 14599671 - 14599740
Alignment:
Q  171 ttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||  ||||||||||||||||||| |||||||||||||||| |||| |||||| |||||| |||||    
T  14599671 ttttttaagtttatttaataaatgatgtatgtggtttattatatataccatatatattatttattgaatg 14599740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 24820435 - 24820339
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||| |||||||||| | |||||||||  |||||||||| ||| |||||||||||| |||| | | ||||||| |||||||| ||||||||| |||||    
T  24820435 tccggtcactattataagcaaaaattctctttttagattcattcaataaatgatgtatgtgatct-ttatataaaccacatacatcatttattgaatg 24820339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 35781308 - 35781220
Alignment:
Q  199 tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtata 287  Q
    |||||||||| | ||||||| |||||||||||||| ||||| | ||| |||||  | ||||||||||| ||||| | | ||||||||||    
T  35781308 tgtggtttataacatagacctcatatatcatttattgaatgaacctaaaaaataaaattttgtttataatagtgactaaatggtgtata 35781220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 24419000 - 24418922
Alignment:
Q  161 caaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||  |||||||||| ||| |||||||||||| ||| || ||| |||||||||||||| ||||||||| |||||    
T  24419000 caaaaattcactttttagattcattcaataaatgatgtatgtcgtctat-atatagaccacatacatcatttattgaatg 24418922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 28882695 - 28882762
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaat 238  Q
    |||||||||| ||| |||||||||||| |||||| |||   |||||||||||||||||||||| ||||    
T  28882695 tttttagattcattcaataaatgatgtatgtggtatatataatagaccacatatatcatttattgaat 28882762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 24820305 - 24820402
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    |||||||||| | |||||||||  || |||| || ||| |||||||||||| ||||||||| |||| ||| |||||| ||||||||| ||||| |||||    
T  24820305 tcactattataagcaaaaattcacttcttaggttcattcaataaatgatgtatgtggttta-tataaagatcacatacatcatttattgaatgaatcta 24820402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 36307997 - 36308096
Alignment:
Q  146 gatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatct 244  Q
    |||||||||||| || |||| ||  |||||||| || ||| |||||||||||| ||||||| | |||||||||  |||| ||||||||| ||||| ||||    
T  36307997 gatcactattataaataaaagttgattttttaggttcattcaataaatgatgtatgtggttca-tatatagactgcatacatcatttattgaatgaatct 36308095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 44319667 - 44319579
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatt 230  Q
    ||||||||||||||| | ||||||||  | ||||||| | ||||| |||||||||| ||| || ||| ||| |||||||||| ||||||    
T  44319667 tccgatcactattataagcaaaaattaatattttagaataatttattaaatgatgtatgtagtctataataaagaccacatacatcatt 44319579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 18654656 - 18654593
Alignment:
Q  171 ttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||||||| || ||||||    
T  18654656 ttttttagatttatttaataaatgatgtatatggtatattatatagaccacatacattatttat 18654593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 21387685 - 21387584
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtag 270  Q
    |||||||||| |||||||||||||||| |||||| ||| ||| |||| ||||| |||||| || ||||| ||||| ||||| || ||||| ||||| |||    
T  21387685 tttttagattcatttaataaatgatgtatgtggtatataataaagactacatacatcattaattgaatgaatctagaaaatggatttttgcttatattag 21387586  T
Q  271 tg 272  Q
    ||    
T  21387585 tg 21387584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 27163274 - 27163212
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    |||||||||| | | |||||||||||| |||||||||| |||||||||||||| |||||||||    
T  27163274 tttttagattcactaaataaatgatgtatgtggtttataatatagaccacatacatcatttat 27163212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 6250707 - 6250642
Alignment:
Q  174 tttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaat 238  Q
    |||||||| |||||||||||||||| ||  || ||| |||||||||||||||||||||||| ||||    
T  6250707 tttagattcatttaataaatgatgtatgcagtatataatatagaccacatatatcatttattgaat 6250642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 30486693 - 30486613
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaat 251  Q
    |||||||||||||| |||||||||||| |||||| ||| ||||| |||||||| || ||||||  |||| ||||| |||||    
T  30486693 tttttagatttattgaataaatgatgtatgtggtgtatgatatataccacatacattatttattcaatgaatctaaaaaat 30486613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 6183023 - 6182958
Alignment:
Q  174 tttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaat 238  Q
    |||||||| |||||||||||||||| || ||||||| |||||||| || || ||||||||| ||||    
T  6183023 tttagattcatttaataaatgatgtatgcggtttataatatagacaacgtacatcatttattgaat 6182958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 19688131 - 19688192
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    |||||| || ||| |||||||||||| ||| ||||||||| ||||||||||| |||||||||    
T  19688131 ttttaggttcattcaataaatgatgtatgtagtttattatgtagaccacatacatcatttat 19688192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 24353809 - 24353858
Alignment:
Q  150 actattattaacaaaaattccttttttagatttatttaataaatgatgtt 199  Q
    |||||||| |||||||||||   ||||| |||||||||||||||||||||    
T  24353809 actattataaacaaaaattcacattttaaatttatttaataaatgatgtt 24353858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 26477297 - 26477244
Alignment:
Q  145 cgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt 198  Q
    ||||||||||||| ||||||||||  | ||| ||||||||||||| ||||||||    
T  26477297 cgatcactattataaacaaaaatttatatttaagatttatttaattaatgatgt 26477244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 26553737 - 26553684
Alignment:
Q  145 cgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt 198  Q
    ||||||||||||| ||||||||||  | ||| ||||||||||||| ||||||||    
T  26553737 cgatcactattataaacaaaaatttatatttaagatttatttaattaatgatgt 26553684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 31319654 - 31319557
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||||||||| |  ||||||   ||||||||||| ||| || ||||||||| ||| || ||| ||| ||||||||||||||||| || |||||    
T  31319654 tccgatcactattataaggaaaaatatattttttagattcattcaaaaaatgatgtatgtagtctataataaagaccacatatatcattaattgaatg 31319557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 36502385 - 36502312
Alignment:
Q  142 ttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatata 214  Q
    ||||| |||||||||| |||||||||   ||||||||||||| | |||||||||||| ||||| |||| |||||    
T  36502385 ttccggtcactattataaacaaaaatatattttttagatttactgaataaatgatgtatgtggcttataatata 36502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 8169205 - 8169138
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||| ||| |||||||||||| ||| || ||| |||||||||||||| ||||||||| |||||    
T  8169205 tttttagattcattcaataaatgatgtatgtagtctat-atatagaccacatacatcatttattgaatg 8169138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 44819671 - 44819719
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatgat 196  Q
    |||||||||| |||||||||   ||||||||||||||| ||||||||||    
T  44819671 tcactattataaacaaaaatgtattttttagatttattaaataaatgat 44819719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 25713767 - 25713824
Alignment:
Q  209 tatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttata 266  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||  |||||||||||||    
T  25713767 tatatagaccacatatatcatttattgaatgaatctaaaaaatcaacttttgtttata 25713824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 1098765 - 1098663
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    |||| |||||||||| | ||||| ||  ||||||||||| ||||||||||| |||| ||| || ||| |||||||||||||| ||||||||| ||||| |    
T  1098765 tccggtcactattataagcaaaagtttattttttagattcatttaataaataatgtatgtagtctat-atatagaccacatacatcatttattgaatgaa 1098667  T
Q  242 tcta 245  Q
    ||||    
T  1098666 tcta 1098663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 4082881 - 4082779
Alignment:
Q  138 catcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcga 236  Q
    ||||||| || ||||||||| |||||||||||   ||||||||||||| |||||||||||| | ||||| || || |||| ||||||||| ||| || ||    
T  4082881 catcttctgaccactattataaacaaaaattcacattttagatttattcaataaatgatgtatatggttaataatgtagatcacatatattattgattga 4082782  T
Q  237 atg 239  Q
    |||    
T  4082781 atg 4082779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 27895904 - 27895954
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatgatgt 198  Q
    |||||||||| ||||||| ||| ||||||||||| ||||||||||||||||    
T  27895904 tcactattataaacaaaagttcattttttagattcatttaataaatgatgt 27895954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 36409745 - 36409685
Alignment:
Q  174 tttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    |||||||| ||| |||||||||||| |||| | ||| ||||||||||||||||||||||||    
T  36409745 tttagattcattgaataaatgatgtatgtgatatatgatatagaccacatatatcatttat 36409685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 12295707 - 12295781
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    |||||| ||||||||||||||| |||| ||| |||||| |||||||| ||||| || |||||| ||||| |||||    
T  12295707 tttttaaatttatttaataaattatgtatgtcgtttataatatagactacatacattatttattgaatgaatcta 12295781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 1098659 - 1098759
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtag 270  Q
    |||||||||| ||| |||||||||||| |||||| || ||||||||| ||||| || ||||||  |||| ||||| |||||  ||||||| ||||| |||    
T  1098659 tttttagattcattcaataaatgatgtatgtggtcta-tatatagactacatacattatttattaaatgaatctaaaaaataaacttttgcttataatag 1098757  T
Q  271 tg 272  Q
    ||    
T  1098758 tg 1098759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 13356231 - 13356178
Alignment:
Q  187 aataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||||| ||||||| |||| |||| ||||||||||||||||| |||||    
T  13356231 aataaatgatgtatgtggttcattaaataggccacatatatcatttattgaatg 13356178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 17967457 - 17967356
Alignment:
Q  139 atcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaa 237  Q
    |||||| | |||||||||| ||||||||||  | ||||| ||| ||| |||||||||||| |||||| | | |||||||| ||||| || |||||| |||    
T  17967457 atcttctggtcactattataaacaaaaattgatattttatattcattcaataaatgatgtatgtggtctttaatatagacaacatacattatttattgaa 17967358  T
Q  238 tg 239  Q
    ||    
T  17967357 tg 17967356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 25408563 - 25408648
Alignment:
Q  161 caaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    ||||||||| | ||||||||| ||| |||||||||||| ||| || ||  ||| |||||||||| ||||||||| ||||| |||||    
T  25408563 caaaaattcatattttagattcattcaataaatgatgtatgttgtctacaataaagaccacatacatcatttattgaatgaatcta 25408648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 566315 - 566383
Alignment:
Q  163 aaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatt 230  Q
    ||||||| ||||||||||| ||| | | |||||||  ||||||| || |||||||||||||||||||||    
T  566315 aaaattcattttttagattcattcatttaatgatgcatgtggttcataatatagaccacatatatcatt 566383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 2673956 - 2673888
Alignment:
Q  172 tttttagatttatttaataaatgatg-ttgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||||||| |||||||||||  ||| || |||  ||||||||||||| ||||||||| |||||    
T  2673956 tttttagatttattcaataaatgatgcatgtagtctatattatagaccacatacatcatttattgaatg 2673888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 15966065 - 15965997
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||| || ||| ||| |||||||| |||||||||| |||||||||||||| |||||| || |||||    
T  15966065 tttttaggttcattcaattaatgatgtatgtggtttataatatagaccacatacatcattaattgaatg 15965997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 36163988 - 36164056
Alignment:
Q  171 ttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||||||||| |||||||||||| ||| ||||| |||||| |||||||||||||||||| |||||    
T  36163988 ttttttagatttattcaataaatgatgtatgtagttta-tatatataccacatatatcatttattgaatg 36164056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 19175697 - 19175629
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||| ||| |||||||||||| ||||||| |||| |||||||||||| ||||||||| |||||    
T  19175697 tttttagattcattcaataaatgatgtatgtggttcattaaatagaccacatacatcatttattgaatg 19175629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 32796884 - 32796834
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaat 193  Q
    ||||||||||||||| |||||||||||  |||||||||| |||||||||||    
T  32796884 tccgatcactattataaacaaaaattcactttttagattcatttaataaat 32796834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 24478763 - 24478706
Alignment:
Q  183 atttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||| || |||||    
T  24478763 atttaattaatgatgtatgtggtttataatatagaccacatatatcattaattgaatg 24478706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 27939194 - 27939242
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatgat 196  Q
    |||||||||| | ||||||||| |||||||||||||| |||||||||||    
T  27939194 tcactattataagcaaaaattcattttttagatttatataataaatgat 27939242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 45239022 - 45239090
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||| ||||||| |||||||| ||||||| || |||||||||||||| |||||| || |||||    
T  45239022 tttttagattcatttaatcaatgatgtatgtggttcataatatagaccacatacatcattaattgaatg 45239090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 50503180 - 50503240
Alignment:
Q  138 catcttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt 198  Q
    |||||||||||||||||||| |||| |||||  | ||||||||||||| ||| ||||||||    
T  50503180 catcttccgatcactattataaacacaaatttatattttagatttattcaattaatgatgt 50503240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 33930768 - 33930835
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaat 238  Q
    |||||||||||||||||| |||||||| ||||||||||  | ||||  ||||||||||||||| ||||    
T  33930768 tttttagatttatttaatgaatgatgtatgtggtttatattgtagattacatatatcatttattgaat 33930835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 3906894 - 3906848
Alignment:
Q  148 tcactattattaacaaaaattccttttttagatttatttaataaatg 194  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  3906894 tcactattataaacaaaaatttattttttagattcatttaataaatg 3906848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 15439924 - 15439870
Alignment:
Q  218 cacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtg 272  Q
    ||||||||||||| || ||||| ||||||||||| || ||||||||||| |||||    
T  15439924 cacatatatcattaattgaatgtatctacaaaatagatttttgtttatattagtg 15439870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 34954034 - 34953904
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    ||||||||||||||| | ||||||||  | ||||||||| ||| ||| |||||||| | |||| | |  ||||||||||||| ||||||||  ||||| |    
T  34954034 tccgatcactattataagcaaaaatttatattttagattcattcaattaatgatgtatatggtctttattatagaccacatacatcatttaatgaatgaa 34953935  T
Q  242 tctacaaaattgacttttgtttatagtagtg 272  Q
    | || || ||||| ||||| ||||| |||||    
T  34953934 tttaaaatattgatttttgcttataatagtg 34953904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 233
Target Start/End: Complemental strand, 44673963 - 44673933
Alignment:
Q  203 gtttattatatagaccacatatatcatttat 233  Q
    |||||||||||||||||||||||||||||||    
T  44673963 gtttattatatagaccacatatatcatttat 44673933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 6156634 - 6156691
Alignment:
Q  141 cttccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt 198  Q
    ||||||||||||||||| |||||||||    |||||||||| ||| ||||||||||||    
T  6156634 cttccgatcactattataaacaaaaatcaactttttagattcattcaataaatgatgt 6156691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 23394798 - 23394737
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    ||||||||| |||||||| ||||||| |||| ||||| || ||||||||||| |||||||||    
T  23394798 ttttagattcatttaatagatgatgtatgtgatttataatgtagaccacatacatcatttat 23394737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 31909859 - 31909790
Alignment:
Q  171 ttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||| || ||| ||| |||||||| |||||||||| |||||||||||||| |||||| || |||||    
T  31909859 ttttttaggttcattcaattaatgatgtatgtggtttataatatagaccacatacatcattaattgaatg 31909790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 52112984 - 52112884
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtag 270  Q
    ||||||| || || ||||||||||||| |||||||| | |||||||||||||| ||||||||| ||||| || || ||| |  ||||||| ||||| |||    
T  52112984 tttttaggttcatctaataaatgatgtatgtggtttct-atatagaccacatacatcatttattgaatgaatataaaaagtgaacttttgcttataatag 52112886  T
Q  271 tg 272  Q
    ||    
T  52112885 tg 52112884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 4682968 - 4683036
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    |||||||||||||| ||| |||||||| ||||||| ||  ||||||||||||| |||||| || |||||    
T  4682968 tttttagatttattcaattaatgatgtatgtggttcatattatagaccacatacatcattaattgaatg 4683036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 27685308 - 27685344
Alignment:
Q  162 aaaaattccttttttagatttatttaataaatgatgt 198  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  27685308 aaaaattcattttttaaatttatttaataaatgatgt 27685344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 44673897 - 44673941
Alignment:
Q  152 tattattaacaaaaattccttttttagatttatttaataaatgat 196  Q
    |||||| ||||||||||  |||||||| |||||||||||||||||    
T  44673897 tattataaacaaaaatttattttttaggtttatttaataaatgat 44673941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 46829980 - 46829920
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcattta 232  Q
    ||||||||||||| | ||||||||||  ||||||||| ||| |||||||||| ||||||||    
T  46829980 ttttagatttattcattaaatgatgtacgtggtttataataaagaccacatagatcattta 46829920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 46906863 - 46907007
Alignment:
Q  143 tccgatcactattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatgga 241  Q
    |||| |||||||||| | |||||||   | ||||||||| ||| | |||||||||| || ||||||| ||| |||| ||||| ||||||||  ||||| |    
T  46906863 tccggtcactattataagcaaaaatctatattttagattcattcattaaatgatgtatgcggtttataatacagactacatacatcatttaatgaatgta 46906962  T
Q  242 tctacaaaattgacttttgtttatagtagtgccgagatggtgtat 286  Q
    |||| ||  |||| ||||| |||||  |||| | |||||||||||    
T  46906963 tctaaaacgttgatttttgcttataacagtgaccagatggtgtat 46907007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 5496 - 5429
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||| ||||||| |||||||| |||||||||| |||||||||||||| |||||| || |||||    
T  5496 ttttagattcatttaattaatgatgtatgtggtttataatatagaccacatacatcattaattgaatg 5429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 161 - 235
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    |||||||||| ||||||||||| |||| ||||||| ||  ||||||||||||| ||||||||| ||||| |||||    
T  161 tttttagattcatttaataaattatgtatgtggttcatattatagaccacatacatcatttattgaatgaatcta 235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 3012480 - 3012401
Alignment:
Q  161 caaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatg 239  Q
    ||||||||| | ||||||||| ||| |||||||||||| ||| |||||  ||| |||||||||| ||||||||| |||||    
T  3012480 caaaaattcatgttttagattcattcaataaatgatgtatgttgtttacaataaagaccacatacatcatttattgaatg 3012401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 17773610 - 17773509
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtag 270  Q
    |||||||||  ||| ||| |||||||| |||| | ||| ||| |||||||||| ||||||||| ||||| ||||| ||| | || ||||||||||| |||    
T  17773610 tttttagatacattcaattaatgatgtatgtgatatataataaagaccacatacatcatttattgaatgtatctaaaaagtggatttttgtttatattag 17773511  T
Q  271 tg 272  Q
    ||    
T  17773510 tg 17773509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 29168593 - 29168532
Alignment:
Q  173 ttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    ||||||||| ||| ||||||| |||| |||||| ||| |||||||||||||| |||||||||    
T  29168593 ttttagattcattgaataaattatgtatgtggtatataatatagaccacatacatcatttat 29168532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 13463063 - 13462968
Alignment:
Q  150 actattattaacaaaaattccttttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttatcgaatggatcta 245  Q
    |||||||| | ||||||||   ||||||| || ||| | |||||||||| |||||||||| |||||||  ||||| ||||||||| |||||||||||    
T  13463063 actattataagcaaaaattgactttttaggttcattcattaaatgatgtatgtggtttat-atatagattacatacatcatttattgaatggatcta 13462968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 19902 - 19840
Alignment:
Q  172 tttttagatttatttaataaatgatgt-tgtggtttattatatagaccacatatatcatttat 233  Q
    |||||||||| ||||||||||| |||| ||||||| ||  ||||||||||||| |||||||||    
T  19902 tttttagattcatttaataaattatgtatgtggttcatattatagaccacatacatcatttat 19840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University