View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_70 (Length: 300)
Name: NF17716_low_70
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 19702738 - 19702459
Alignment:
| Q |
1 |
tcaaattgaggtagaaataactattaaagtagtcattaaatttgtctttatcctgacacagatatgcagaaatttaagattaactgtcattaaattttca |
100 |
Q |
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| T |
19702738 |
tcaaattgaggtagaaataactattatagtagtcattaaatttgtctttatcctgacacagatatgcagaaatttacgattaactgtcattaagttttca |
19702639 |
T |
|
| Q |
101 |
agctagaagttctcaataattcagcacaagttcatatctcataacgaagttcattgattcaatgtgtgtttacagttcctattctgtgtaaaagaaaaca |
200 |
Q |
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| T |
19702638 |
agcaagaagttctcaataattcagcacaagttcatatctcataacgaagttcattgattcaatgtgtgtttacagttcctattctgtgtaaaagaaaaca |
19702539 |
T |
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| Q |
201 |
cctgaggacaacaatcaatgagtaaaaatggaagtgaacaaagaacaaaatggtaaaaatgattagactacacttagacc |
280 |
Q |
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| T |
19702538 |
cctgaggacaacaatcaatgagtaaaaatggaagtgaacaaagaacaaaatggtaaaaatgattagactacacttagacc |
19702459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 19961487 - 19961342
Alignment:
| Q |
2 |
caaattgaggtagaaataactattaaagtagtcattaaatttgtctttatcctgacacagatatgcagaa---atttaagattaactgtcattaaatttt |
98 |
Q |
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| T |
19961487 |
caaattgagctagaaataactattgcagtagtcataaaattatt-tttatcctgacccagatatgcagaagaaatttaagattaactgccattaaatttt |
19961389 |
T |
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| Q |
99 |
caagctagaagttctcaataattcagcacaagttcatatctcataac |
145 |
Q |
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| T |
19961388 |
caagctagcagttctcaatgatttaccacaagtttatatcccataac |
19961342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 20014034 - 20014142
Alignment:
| Q |
165 |
tgtgtttacagttcctattctgtgtaaaagaaaacacctgaggacaacaatcaatgagtaa--aaat--ggaagtgaacaaagaacaaaatggtaaaaat |
260 |
Q |
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||||| ||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||| |||| | || |||| ||||||||||||||||||| |
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| T |
20014034 |
tgtgtatacagttcctattctatgtacaagaaaacagctgaggacgacaatcaatgagtaaataaatacagtagaaaacagagaacaaaatggtaaaaat |
20014133 |
T |
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| Q |
261 |
gattagact |
269 |
Q |
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||||||||| |
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| T |
20014134 |
gattagact |
20014142 |
T |
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