View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_79 (Length: 255)
Name: NF17716_low_79
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_79 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 36859941 - 36860188
Alignment:
| Q |
1 |
aacatcatctttcatccataattcacgttgtccacatcatattaataataatgtctgtcctaggtgctcttttctttccctaccttcccaaatcacaggc |
100 |
Q |
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| T |
36859941 |
aacatcatctttcatccataattcactttgtccacatcatattaataataatttctgtcctaggtgctcttttctttccctaccttcccaaatcacaggc |
36860040 |
T |
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| Q |
101 |
ttaacttgcacacatgttcataacatggttgttttgcgcatgttgtgttagaatcttattggggtaatgtaacaattaacaaacgacattatttgggtca |
200 |
Q |
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| T |
36860041 |
ttaacttgcacacatgctcacaacatggttgttttgctcatgttgtgttagaatcttatcggtgtaat-------ataacaaacaacattatttgggtca |
36860133 |
T |
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| Q |
201 |
gtgtccactctttttcttccaccttaatttgtttagagcaattaatgttgtttag |
255 |
Q |
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| T |
36860134 |
gtgtccactctttttcttccaccttaatttgtttagagcaattaatgttgtttag |
36860188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 35029842 - 35029642
Alignment:
| Q |
43 |
taataataatgtctgtcctaggtgctcttttctttccctaccttcccaaatcacaggcttaacttgcacacatgttcataacatggttgttttgcgcatg |
142 |
Q |
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| T |
35029842 |
taataataatgtctgtcataggt--tcttttctttccctaccttcccaaatcaccggcttaact-gcacacatgttcacaacatggctgttttgatcatg |
35029746 |
T |
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| Q |
143 |
ttgtgttagaatcttattggggtaatgtaacaattaacaaacgacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagcaat |
242 |
Q |
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| T |
35029745 |
ttgtgttagaatcttattggtgtaat-------ataacaaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagctat |
35029653 |
T |
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| Q |
243 |
taatgttgttt |
253 |
Q |
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| T |
35029652 |
taatgttgttt |
35029642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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