View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_80 (Length: 254)
Name: NF17716_low_80
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 5791941 - 5792165
Alignment:
| Q |
12 |
agattattctcgtttctatgtcaccattatgaaagctggaactctaagctcattggaagctctcaaagtggcaatttcgaatggaatgcattttgtgcta |
111 |
Q |
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| T |
5791941 |
agattattctcgtttctatgtcaccattatgaaagctggaactctaagctcattggaagctctcaaagtggcaatttcgaatggaatgcattttgtgcta |
5792040 |
T |
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| Q |
112 |
tttgaaatagatttcaagattttatcggacatgcttgccaccaacaactctcctattaatgagtttgctgattttgtatcttgatgtagaagtctcttat |
211 |
Q |
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| T |
5792041 |
tttgaaacagattccaagattttatccgacatgcttgccaccaacaactctcctattaatgagtttgctgattttgtatcttaatgtagaagtctcttat |
5792140 |
T |
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| Q |
212 |
taaatagaaacgactttgtagtgtc |
236 |
Q |
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| T |
5792141 |
taaatagaaacaactttgtagtgtc |
5792165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 899027 - 898902
Alignment:
| Q |
12 |
agattattctcgtttctatgtcaccattatgaaagctggaactctaagctcattggaagctctcaaagtggcaatttcgaatggaatgcattttgtgcta |
111 |
Q |
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| T |
899027 |
agattattctccttcctctttcatcattctaaaagctggaactctaggcttactggaagctctgaaagtgatcatttcaaatggaatgcatattgttctg |
898928 |
T |
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| Q |
112 |
tttgaaatagatttcaagattttatc |
137 |
Q |
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| T |
898927 |
tttgaaattgatttcaagattttatc |
898902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 10394462 - 10394632
Alignment:
| Q |
63 |
attggaagctctcaaagtggcaatttcgaatggaatgcattttgtgctatttgaaatagatttcaagattttatcggac-atgcttgccaccaacaactc |
161 |
Q |
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| T |
10394462 |
attggaagctttcaaagtggcaattttgaatggaatgcattatgttctatttgaaacggattccaagattttataggaccat--tggctatcaacaactc |
10394559 |
T |
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| Q |
162 |
t------cctattaatgagtttgctgattttgtatcttgatgtagaagtctcttattaaatagaaacgacttt |
228 |
Q |
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| T |
10394560 |
tgactctcctatgaatgtgtttcgtgatcttgtatttcaacgtagaagtctcttattaaatagaaatgacttt |
10394632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 21430954 - 21430801
Alignment:
| Q |
12 |
agattattctcgtttctatgtcaccattatgaaagctggaactctaagctcattggaagctctcaaagtggcaatttcgaatggaatgcattttgtgcta |
111 |
Q |
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| T |
21430954 |
agattattctccttcctctgccaccattatggaagctgaaactccaagcttattggaagctatcaaagtggcaatttcgaatggaatgcattctggtttg |
21430855 |
T |
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| Q |
112 |
tttgaaatagatttcaagattttatcggacatgcttgccaccaacaactctcct |
165 |
Q |
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| T |
21430854 |
tttgaaacagattccaagattttatctgacacactcaccaccaacaactctcct |
21430801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 31574698 - 31574746
Alignment:
| Q |
76 |
aaagtggcaatttcgaatggaatgcattttgtgctatttgaaatagatt |
124 |
Q |
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| T |
31574698 |
aaagtggctatttcaaatgggatgcatgttgtactatttgaaatagatt |
31574746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 27949679 - 27949633
Alignment:
| Q |
185 |
ttgtatcttgatgtagaagtctcttattaaatagaaacgactttgta |
231 |
Q |
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| T |
27949679 |
ttgtatcttaatgtagaagtttcttacttaatagaaacgactttgta |
27949633 |
T |
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