View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_81 (Length: 251)

Name: NF17716_low_81
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_81
NF17716_low_81
[»] chr3 (2 HSPs)
chr3 (84-168)||(27237536-27237620)
chr3 (13-85)||(27237433-27237505)
[»] chr8 (1 HSPs)
chr8 (13-84)||(7351483-7351554)
[»] chr5 (2 HSPs)
chr5 (13-76)||(13475644-13475707)
chr5 (13-68)||(971823-971878)
[»] chr7 (1 HSPs)
chr7 (13-65)||(33081800-33081852)
[»] chr6 (2 HSPs)
chr6 (13-85)||(13850657-13850729)
chr6 (84-168)||(13850536-13850620)
[»] chr4 (3 HSPs)
chr4 (13-76)||(47286694-47286757)
chr4 (104-168)||(35030353-35030417)
chr4 (13-60)||(35030307-35030354)
[»] chr1 (1 HSPs)
chr1 (137-219)||(32940763-32940844)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 27237536 - 27237620
Alignment:
Q  84 ttcaaaagcgcttctcaacaagagttgaacacaagacacacacatcattcaatagacggataccgctcggctaatcatggaactg 168  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||| ||||||||||    
T  27237536 ttcaaaagcgcttctcaacaagagttgaacacatgacacgcacatcattcaatagacgcataccactcggctaaccatggaactg 27237620  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 27237433 - 27237505
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcgattgcctgcaataccctttt 85  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||    
T  27237433 aatatagtgaaatggtataggtggaagcattttaccattttgttgcaggttcgattctctgcaacaccctttt 27237505  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 7351483 - 7351554
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcgattgcctgcaatacccttt 84  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  7351483 aatatagcgaaatggtatagatggaagcattttaccattgtgttgcaggttcgattccctgcaacacccttt 7351554  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 13475644 - 13475707
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcgattgcctgcaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  13475644 aatatagcgaaatggtataggtggaagcattttaccattgtgttgtaggttcgattccctgcaa 13475707  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 971823 - 971878
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcgatt 68  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  971823 aatatagtaaaatggcataggtggaagcattttaccattgtgttgcaggttcgatt 971878  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 33081852 - 33081800
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33081852 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcg 33081800  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 13850729 - 13850657
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcgattgcctgcaataccctttt 85  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  13850729 aatatagtgaattggtataggtggaagcattttaccattgtgttgcaggtttgattccctgcaacaccctttt 13850657  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 13850620 - 13850536
Alignment:
Q  84 ttcaaaagcgcttctcaacaagagttgaacacaagacacacacatcattcaatagacggataccgctcggctaatcatggaactg 168  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||  | ||| ||||||||| |||| |||||    
T  13850620 ttcaaaagcgcttctcaacaagagttgaacacaggtcacgcacatcattcagtagactcaaaccactcggctaaccatgaaactg 13850536  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 47286694 - 47286757
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcaggttcgattgcctgcaa 76  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  47286694 aatatagtgaaatgatataggtggaagcattttaccattgtgttgcaagttcgattccctgcaa 47286757  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 35030353 - 35030417
Alignment:
Q  104 agagttgaacacaagacacacacatcattcaatagacggataccgctcggctaatcatggaactg 168  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||| |||||    
T  35030353 agagttgaacacaggacacacacatcattcaatagacgcataccactcggctaaccatgaaactg 35030417  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 35030307 - 35030354
Alignment:
Q  13 aatatagcgaaatggtataggtggaagcattttaccattgtgttgcag 60  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  35030307 aatatagcgaaatggtatagttggaagcattttaccattgtgttgcag 35030354  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 32940844 - 32940763
Alignment:
Q  137 agacggataccgctcggctaatcatggaactgtggcatatcaggcgatttatataatatataataagtatttaaatcaagtat 219  Q
    ||||| ||||| ||||||||| ||||||||| |||||||| || ||| |||||||||||||||||| ||||||||||||||||    
T  32940844 agacgcataccactcggctaaccatggaactatggcatattag-cgacttatataatatataataattatttaaatcaagtat 32940763  T

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