View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_82 (Length: 251)
Name: NF17716_low_82
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_82 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 3575078 - 3574844
Alignment:
| Q |
17 |
atcaagatcaatccttttagaagctatctttttcctaaggtagtgatcaacaagttcttcatcagtgggatggaaacgaaatccaggaggaacgtgtgag |
116 |
Q |
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| T |
3575078 |
atcaagatcaatccttttagaagctatctttttcctaaggtagtgatcaacaagttcttcatcagtgggatggaaacgaaatccaggaggaacgtgtgag |
3574979 |
T |
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| Q |
117 |
aaattgttcatatctgctagctatagataattcaaattcaacctgcacgcatttgaggggaaaacaaacaatattaaattataggtggtgaataatgtgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
3574978 |
aaattgttcatatctgctagctatagataattcaaattcaacctgcacgcatttgaggggaaaacaaacaatattaaattataagcggtgaataatgtgt |
3574879 |
T |
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| Q |
217 |
ctacggtgcactaattaaattatgagattcacttc |
251 |
Q |
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| T |
3574878 |
ctacggtgcactaattaaattatgagattcacttc |
3574844 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 12850549 - 12850474
Alignment:
| Q |
16 |
catcaagatcaatccttttagaagctatctttttcctaaggtagtgatcaacaagttcttcatcagtgggatggaa |
91 |
Q |
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| T |
12850549 |
catcaagatcaatccttcttgaagcaattttcttcctaaggtagtaatccacaagttcttcatctgtgggatggaa |
12850474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 42049021 - 42049120
Alignment:
| Q |
16 |
catcaagatcaatccttttagaagctatctttttcctaaggtagtgatcaacaagttcttcatcagtgggatggaaacgaaatccaggaggaacgtgtga |
115 |
Q |
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| T |
42049021 |
catcgagatcaatctttttagacgataccttcttcctgaggtagtaatcaacaagttcttcgtcggttggatgaaaacgaaagcctggaggtacatgtga |
42049120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 28613805 - 28613766
Alignment:
| Q |
65 |
aacaagttcttcatcagtgggatggaaacgaaatccagga |
104 |
Q |
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| T |
28613805 |
aacaagttcttcatcagtgggatggaatcgaaatccagga |
28613766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 28628475 - 28628436
Alignment:
| Q |
65 |
aacaagttcttcatcagtgggatggaaacgaaatccagga |
104 |
Q |
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| T |
28628475 |
aacaagttcttcatcagtgggatggaatctaaatccagga |
28628436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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