View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_85 (Length: 249)
Name: NF17716_low_85
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_85 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 41585070 - 41584838
Alignment:
| Q |
17 |
tgaaccagtgaccataaattagagatgagaaccagattgtatgaaaaacagatgatcatattaaagcaaaatggaaggtagcgagcgagacttccgggat |
116 |
Q |
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| T |
41585070 |
tgaaccagtgaccataaattagagatgagaaccagattgtatgaaaaacagatgatcatattaaagcaaaatggaaggtagcgagcaagacttccgggat |
41584971 |
T |
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| Q |
117 |
cttttgggagctctaatagcagtttgttattatgcatttcaaagaataatccgagatactcaattgaagaaaccataaattaattatgatgctgaaaatc |
216 |
Q |
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| T |
41584970 |
cttttgggagctctaatagcagtttgttattatgcatttcaaagaataatccgagatactcaattgaagaaaccataaattaattatgatgctgaaaatc |
41584871 |
T |
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| Q |
217 |
aattaaaaaatgacgaataagaaagcacaataa |
249 |
Q |
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| T |
41584870 |
aattaaaaaatgacgaataagaaagctcaataa |
41584838 |
T |
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