View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_87 (Length: 243)

Name: NF17716_low_87
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_87
NF17716_low_87
[»] chr2 (5 HSPs)
chr2 (37-156)||(32492497-32492617)
chr2 (156-224)||(5848136-5848204)
chr2 (156-224)||(19380265-19380333)
chr2 (158-220)||(38807263-38807325)
chr2 (157-222)||(42242086-42242151)
[»] chr1 (13 HSPs)
chr1 (157-224)||(7015031-7015098)
chr1 (154-224)||(16313898-16313968)
chr1 (154-221)||(12068028-12068095)
chr1 (155-224)||(1181540-1181609)
chr1 (157-222)||(16315368-16315433)
chr1 (176-221)||(43514356-43514401)
chr1 (155-215)||(12063410-12063470)
chr1 (156-220)||(49000829-49000893)
chr1 (156-221)||(23943653-23943718)
chr1 (177-220)||(44490725-44490768)
chr1 (174-220)||(30704550-30704596)
chr1 (163-224)||(9355439-9355500)
chr1 (156-201)||(46923664-46923709)
[»] chr5 (7 HSPs)
chr5 (157-222)||(20887908-20887973)
chr5 (157-224)||(12143809-12143876)
chr5 (156-221)||(35048688-35048753)
chr5 (157-224)||(29195198-29195265)
chr5 (162-219)||(29196071-29196128)
chr5 (157-224)||(2743899-2743966)
chr5 (157-214)||(35050498-35050555)
[»] chr4 (19 HSPs)
chr4 (154-219)||(12656345-12656410)
chr4 (155-224)||(45864997-45865066)
chr4 (155-224)||(54185653-54185722)
chr4 (157-224)||(32304840-32304907)
chr4 (157-222)||(43210231-43210296)
chr4 (157-224)||(22923364-22923431)
chr4 (157-224)||(22928017-22928084)
chr4 (157-224)||(22984296-22984363)
chr4 (157-224)||(22997884-22997951)
chr4 (155-222)||(33990593-33990660)
chr4 (157-224)||(12657239-12657308)
chr4 (172-222)||(50336433-50336483)
chr4 (155-220)||(49285491-49285556)
chr4 (157-224)||(1939411-1939478)
chr4 (155-218)||(5534321-5534384)
chr4 (157-224)||(50333980-50334047)
chr4 (154-201)||(21713320-21713367)
chr4 (174-219)||(1938411-1938456)
chr4 (157-201)||(31825884-31825928)
[»] chr8 (5 HSPs)
chr8 (154-219)||(41600950-41601015)
chr8 (157-227)||(4412597-4412667)
chr8 (157-221)||(5076308-5076372)
chr8 (157-215)||(9459621-9459679)
chr8 (158-224)||(37226988-37227054)
[»] chr7 (4 HSPs)
chr7 (157-221)||(23943775-23943839)
chr7 (163-222)||(44221829-44221888)
chr7 (175-222)||(11356189-11356236)
chr7 (158-224)||(432977-433043)
[»] chr6 (4 HSPs)
chr6 (178-224)||(7527111-7527157)
chr6 (156-217)||(35018792-35018853)
chr6 (156-224)||(1031828-1031896)
chr6 (156-201)||(5741177-5741222)
[»] chr3 (5 HSPs)
chr3 (155-224)||(46182935-46183004)
chr3 (176-224)||(34436997-34437045)
chr3 (154-224)||(46637103-46637173)
chr3 (156-227)||(29522170-29522240)
chr3 (178-219)||(53772351-53772392)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 32492497 - 32492617
Alignment:
Q  37 aatatatacgatacgaccaagcaagcacctttggtacgaacccctcatgcatgctatttatgttatgatcaagtccttgtacctt-gtgctaacgaaagt 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  32492497 aatatatacgatacgaccaagcaagcacctttggtacgaacccctcatgcatgctatttatgttatgatcaagtccttgtaccttggtcctaacgaaagt 32492596  T
Q  136 ttgtgtctgaaatcatgcaaa 156  Q
    ||||||||||| |||||||||    
T  32492597 ttgtgtctgaactcatgcaaa 32492617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 5848204 - 5848136
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||||||||| ||||| |||||||||| ||||||| || |||||| ||| ||||||||||||||||||    
T  5848204 agaattctgctatccaccctgcacattttgctcgcgcccagcagccattccaaatttacccttgcgcta 5848136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 19380333 - 19380265
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||| |||||||||| | |||||||| ||||||| ||||||||||||| |||||||| |||||||||    
T  19380333 agaattttgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttactcttgcgcta 19380265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 38807325 - 38807263
Alignment:
Q  158 aattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgc 220  Q
    |||| |||||||||| ||||||||||  ||| || ||| ||||||||| ||||||||||||||    
T  38807325 aattatgctctccaccctgcacattttactcacgccctacagccgttccaaatttacccttgc 38807263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 42242151 - 42242086
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    |||| ||||||| ||| |||||||||| ||||||| ||||||||||| | |||  |||||||||||    
T  42242151 gaatactgctcttcaccctgcacattttgctcgcgccctgcagccgtgccaaaaatacccttgcgc 42242086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 7015098 - 7015031
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||||||| | |||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  7015098 gaattctgctctccacccagcacattttgctcgcgccctgcagccgttcgaaatttacccttgcgcta 7015031  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 16313898 - 16313968
Alignment:
Q  154 aaagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||| |||||||||| | |||||||| ||||||||| ||||||||||  ||||||||||||||||||    
T  16313898 aaagaattatgctctccacccagcacattttgctcgcgtcatgcagccgtttcaaatttacccttgcgcta 16313968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 12068095 - 12068028
Alignment:
Q  154 aaagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcg 221  Q
    |||||||| |||||||||| | |||||||| ||||||| ||||||||||||| ||||||| |||||||    
T  12068095 aaagaattatgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttatccttgcg 12068028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 1181609 - 1181540
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||||||||| | |||||||| ||||||||||| ||| | ||  ||||||||||||||||||    
T  1181609 aagaattctgctctccacccagcacattttgctcgcgtcctacagtcttttcaaatttacccttgcgcta 1181540  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 16315433 - 16315368
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    |||| ||||||||||| |||||||||| ||||||| ||| ||||||||| ||||||| ||||||||    
T  16315433 gaatcctgctctccaccctgcacattttgctcgcgccctacagccgttccaaatttatccttgcgc 16315368  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 43514356 - 43514401
Alignment:
Q  176 gcacatttggctcgcgtcctgcagccgttctaaatttacccttgcg 221  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||    
T  43514356 gcacattttgctcgcgtcctgcagccgttttaaatttacccttgcg 43514401  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 12063410 - 12063470
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacc 215  Q
    |||||||||||||||||   || |||||| ||||||||||||||||||||| |||||||||    
T  12063410 aagaattctgctctccatcttgtacattttgctcgcgtcctgcagccgttccaaatttacc 12063470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 49000893 - 49000829
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgc 220  Q
    |||||| |||||| ||| | |||||||| ||||||| |||| |||||||||||||||||||||||    
T  49000893 agaattttgctcttcacccagcacattttgctcgcgccctgtagccgttctaaatttacccttgc 49000829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 23943718 - 23943653
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcg 221  Q
    ||||||||||||| ||| |||||||||| ||| ||| |||||| |||||| |||| ||||||||||    
T  23943718 agaattctgctcttcaccctgcacattttgcttgcgccctgcaaccgttccaaatatacccttgcg 23943653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 44490768 - 44490725
Alignment:
Q  177 cacatttggctcgcgtcctgcagccgttctaaatttacccttgc 220  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||    
T  44490768 cacattttgctcgcgccctgcagccgttccaaatttacccttgc 44490725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 30704596 - 30704550
Alignment:
Q  174 ctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgc 220  Q
    |||||| ||| ||||||| ||||||||||||||||||||||| ||||    
T  30704596 ctgcaccttttgctcgcgccctgcagccgttctaaatttaccattgc 30704550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 9355500 - 9355439
Alignment:
Q  163 tgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||| |||||||||| ||||||| |||||  | ||| ||| |||||||||||||||    
T  9355500 tgctctccaccctgcacattttgctcgcgccctgcgcctgttttaagtttacccttgcgcta 9355439  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 46923664 - 46923709
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagcc 201  Q
    ||||||||||||| ||| |||||||||| ||||||| |||||||||    
T  46923664 agaattctgctcttcaccctgcacattttgctcgcgccctgcagcc 46923709  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 20887973 - 20887908
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    |||||||||||||||| |||||||||| |||||||  |||||||||||| ||||||||||||||||    
T  20887973 gaattctgctctccaccctgcacattttgctcgcgctctgcagccgttcgaaatttacccttgcgc 20887908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 12143809 - 12143876
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||||||||||||||   |||||||| ||||||| ||||||||||||||||||||||| ||||||||    
T  12143809 gaattctgctctccacctagcacattttgctcgcgccctgcagccgttctaaatttacctttgcgcta 12143876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 35048688 - 35048753
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcg 221  Q
    ||||||||||||||||| | |||||||| ||||||  ||||||||||||  |||||||||||||||    
T  35048688 agaattctgctctccacccagcacattttgctcgctccctgcagccgtttcaaatttacccttgcg 35048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 29195198 - 29195265
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||||||| | ||| |||| ||||||  ||||| ||||||| ||||||||||||||||||    
T  29195198 gaattctgctctccacccagcatattttgctcgctccctgcggccgttccaaatttacccttgcgcta 29195265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 29196128 - 29196071
Alignment:
Q  162 ctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttg 219  Q
    ||||||||||| |||||||||| ||||||| | |||||| |||| |||||||||||||    
T  29196128 ctgctctccaccctgcacattttgctcgcgccatgcagcagttccaaatttacccttg 29196071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 2743966 - 2743899
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||| ||| | |||||||| ||||| | | ||||||||||| ||||||| ||||||||||    
T  2743966 gaattctgctcttcacccagcacattttgctcgtgccttgcagccgttccaaatttatccttgcgcta 2743899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 35050555 - 35050498
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttac 214  Q
    |||| ||||||||||| |||||||||| | ||||| |||||| || ||||||||||||    
T  35050555 gaatcctgctctccaccctgcacattttgttcgcgccctgcaaccattctaaatttac 35050498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 12656345 - 12656410
Alignment:
Q  154 aaagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttg 219  Q
    ||||||| ||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||||    
T  12656345 aaagaatcctgctctccaccctgcacattttgctcgcaccctgcagccgttctaaatttacccttg 12656410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 45865066 - 45864997
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||| ||||||||||||||| |||||||||    
T  45865066 aagaattctgctatccaccctgcacattttgctcgcgccctgcaaccgttctaaatttactcttgcgcta 45864997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 54185722 - 54185653
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||||||||| ||||| |||| ||||||| ||||||||||||  ||||||||||||||||||    
T  54185722 aagaattctgctctccaccctgcatattttgctcgcgccctgcagccgtttcaaatttacccttgcgcta 54185653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 32304840 - 32304907
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||| || ||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  32304840 gaattatgttcttcaccctgcacattttgctcgcgtcttgcagccgttctaaatttacccttgcgcta 32304907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 43210296 - 43210231
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    |||||||||||||||| ||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  43210296 gaattctgctctccacactgcatattttgctcgcgccctgcagccgtttcaaatttacccttgcgc 43210231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 22923431 - 22923364
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||| |||||||||| | |||||||| ||||||| | ||||||||||| ||||||||||||||||||    
T  22923431 gaattttgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgcta 22923364  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 22928084 - 22928017
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||| |||||||||| | |||||||| ||||||| | ||||||||||| ||||||||||||||||||    
T  22928084 gaattttgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgcta 22928017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 22984363 - 22984296
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||| |||||||||| | |||||||| ||||||| | ||||||||||| ||||||||||||||||||    
T  22984363 gaattttgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgcta 22984296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 22997951 - 22997884
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||| |||||||||| | |||||||| ||||||| | ||||||||||| ||||||||||||||||||    
T  22997951 gaattttgctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgcta 22997884  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 33990593 - 33990660
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    |||||| ||||||| ||||||||| ||||  ||| ||||||||||||||| |||||||||||||||||    
T  33990593 aagaatcctgctctacactctgcaaattttactcacgtcctgcagccgttttaaatttacccttgcgc 33990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 12657308 - 12657239
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgt--cctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||||||| | |||||||| |||||||   ||||||||||||| ||||||||||||||||||    
T  12657308 gaattctgctctccacccagcacattttgctcgcgcgccctgcagccgttccaaatttacccttgcgcta 12657239  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 50336483 - 50336433
Alignment:
Q  172 ctctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  50336483 ctctgcacattttgctcgcgccctgcagccgttccaaatttacccttgcgc 50336433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 49285491 - 49285556
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgc 220  Q
    |||||||||||| ||||| |||||||||| ||||||| | || ||||||| |||||||||||||||    
T  49285491 aagaattctgctttccaccctgcacattttgctcgcggcttgtagccgttttaaatttacccttgc 49285556  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 1939478 - 1939411
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||||||||||| || | |||||||| ||||||| ||||||||||||| ||||||| |||| |||||    
T  1939478 gaattctgctctctacccagcacattttgctcgcgccctgcagccgttccaaatttatccttacgcta 1939411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 5534384 - 5534321
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttaccctt 218  Q
    |||||| ||||||||||| ||||||||||  |||||  ||||||||||||| ||||||||||||    
T  5534384 aagaatcctgctctccaccctgcacattttactcgcaccctgcagccgttccaaatttaccctt 5534321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 50333980 - 50334047
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||||||||||| | |||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  50333980 gaattctgctctccacccggcacattttgctcgcaccctacaaccgttccaaatttacccttgcgcta 50334047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 21713367 - 21713320
Alignment:
Q  154 aaagaattctgctctccactctgcacatttggctcgcgtcctgcagcc 201  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||    
T  21713367 aaagaattctgctcttcaccctgcacattttgctcgcgccctgcagcc 21713320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 1938411 - 1938456
Alignment:
Q  174 ctgcacatttggctcgcgtcctgcagccgttctaaatttacccttg 219  Q
    |||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  1938411 ctgcacattttgctcgcgccctgcagcagttttaaatttacccttg 1938456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 31825928 - 31825884
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagcc 201  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgccctgcagcc 31825884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 41600950 - 41601015
Alignment:
Q  154 aaagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttg 219  Q
    ||||||| ||||||||||| ||||||||||  |||||||||||||||||||| ||||||| |||||    
T  41600950 aaagaatcctgctctccaccctgcacattttactcgcgtcctgcagccgttccaaatttatccttg 41601015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 4412597 - 4412667
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgctaatt 227  Q
    ||||||||||||  || | |||||||| ||||||| ||||||||||||| ||||||||| |||||||||||    
T  4412597 gaattctgctctttacccagcacattttgctcgcgccctgcagccgttccaaatttacctttgcgctaatt 4412667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 5076372 - 5076308
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcg 221  Q
    |||||||||||||||| |||||||| | ||||||| | ||||||||||  ||||||||| |||||    
T  5076372 gaattctgctctccaccctgcacatgttgctcgcgccttgcagccgtttcaaatttaccattgcg 5076308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 9459679 - 9459621
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacc 215  Q
    |||||||||||||||  | |||||||| ||||||||| ||||||| ||| |||||||||    
T  9459679 gaattctgctctccatccagcacattttgctcgcgtcttgcagcccttccaaatttacc 9459621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 37226988 - 37227054
Alignment:
Q  158 aattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||||||||| ||| | |||||||| ||||||| ||||||||| ||| ||||||||| ||| ||||    
T  37226988 aattctgctcttcacccagcacattttgctcgcgccctgcagccattccaaatttacctttgtgcta 37227054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 23943839 - 23943775
Alignment:
Q  157 gaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcg 221  Q
    |||||||||||| ||| |||||||||| |||||||  ||||||||||||||||| ||||||||||    
T  23943839 gaattctgctcttcaccctgcacattttgctcgcgctctgcagccgttctaaatatacccttgcg 23943775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 44221829 - 44221888
Alignment:
Q  163 tgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    ||||||||||||| ||||||| |||||||  ||||||||||| |||||||||||||||||    
T  44221829 tgctctccactcttcacattttgctcgcgctctgcagccgttttaaatttacccttgcgc 44221888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 11356189 - 11356236
Alignment:
Q  175 tgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgc 222  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  11356189 tgcacattttgctcgtgccctgcagccgttctaaatttacccttgcgc 11356236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 433043 - 432977
Alignment:
Q  158 aattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||| |||||||||| |||||||||| ||||||  || |||||||||  ||||||||||||||||||    
T  433043 aattttgctctccaccctgcacattttgctcgcacccggcagccgtttcaaatttacccttgcgcta 432977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 7527157 - 7527111
Alignment:
Q  178 acatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7527157 acattttgctcgcgccctgcagccgttctaaatttacccttgcgcta 7527111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 35018853 - 35018792
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttaccct 217  Q
    ||||||||||||| ||| |  ||||||| ||||||||||||||||||||| |||||||||||    
T  35018853 agaattctgctcttcacccaacacattttgctcgcgtcctgcagccgttccaaatttaccct 35018792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 1031896 - 1031828
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||| |||||||||||| | |||||||| ||||||  | | ||||||||| ||||||||||||||||||    
T  1031896 agaactctgctctccacccagcacattttgctcgcaccgtccagccgttccaaatttacccttgcgcta 1031828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 5741177 - 5741222
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagcc 201  Q
    ||||||||||||| ||| |||||| ||| |||||||||||||||||    
T  5741177 agaattctgctcttcaccctgcactttttgctcgcgtcctgcagcc 5741222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 46182935 - 46183004
Alignment:
Q  155 aagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    ||||||||||||||||||  ||||||||| |||| |  ||||||||||||  ||||||||||||||||||    
T  46182935 aagaattctgctctccaccttgcacattttgctcacaccctgcagccgtttcaaatttacccttgcgcta 46183004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 34436997 - 34437045
Alignment:
Q  176 gcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  34436997 gcacattttgctcgcgtcctgcagccgttccaaatttacccttacgcta 34437045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 46637173 - 46637103
Alignment:
Q  154 aaagaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgcta 224  Q
    |||||||| |||||||||  |||||||||| ||||||| | ||||||||||| ||||||| |||| |||||    
T  46637173 aaagaattatgctctccatcctgcacattttgctcgcgccatgcagccgttccaaatttatccttacgcta 46637103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 29522170 - 29522240
Alignment:
Q  156 agaattctgctctccactctgcacatttggctcgcgtcctgcagccgttctaaatttacccttgcgctaatt 227  Q
    ||||||||||||| ||| | ||| |||| ||||| | ||||||||||||| ||||||||| |||||||||||    
T  29522170 agaattctgctcttcacccagcatattttgctcgtg-cctgcagccgttccaaatttacctttgcgctaatt 29522240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 53772392 - 53772351
Alignment:
Q  178 acatttggctcgcgtcctgcagccgttctaaatttacccttg 219  Q
    |||||| |||||||||||||||| |||| |||||||||||||    
T  53772392 acattttgctcgcgtcctgcagctgttcaaaatttacccttg 53772351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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