View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_9 (Length: 570)
Name: NF17716_low_9
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 453 - 570
Target Start/End: Complemental strand, 36690460 - 36690343
Alignment:
| Q |
453 |
gcttcttcctaagtcactccttttttctaactttgaagatcagaaccccactcactctaactaagctttgtatttgtgcctcttttgttttattctattc |
552 |
Q |
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| T |
36690460 |
gcttcttcctaagttactacttttttctaactttgaagatcagaaccccactcactctaactaagctttgtatttgtgcctcttttgttttattctattc |
36690361 |
T |
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| Q |
553 |
catttcctataaaattat |
570 |
Q |
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| T |
36690360 |
catttcctataaaattat |
36690343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 36690762 - 36690657
Alignment:
| Q |
157 |
ggacctgaatggttttgacaggaggtttgttaagacgattcaaatgcttgttaacctcaaacttttgtcttgaaccaccaagtctagttgaagaagacac |
256 |
Q |
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| T |
36690762 |
ggacctgaatggttttgacaggaggtttgttaagacgattcaaatgcttgttaacctcaaacttttgtcttgaaccaccaagcctagttgaagaagacac |
36690663 |
T |
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| Q |
257 |
cgagat |
262 |
Q |
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| T |
36690662 |
cgagat |
36690657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 36690918 - 36690792
Alignment:
| Q |
1 |
attcaaaaccatttctgaaacatatcccctcaaattaatgnnnnnnnnnnnnnnnnctaacttttcttcaaaataatgctattttctctggtacaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36690918 |
attcaaaaccatttctgaaacatatcccctcaaattaaagaaaataaaataaaaaactaacttttcttcaaaataatgctattttctctggtacaaatca |
36690819 |
T |
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| Q |
101 |
gaatgtagatggggaacaaacataaac |
127 |
Q |
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| T |
36690818 |
gaatgtagatggggaacaaacataaac |
36690792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 36690571 - 36690504
Alignment:
| Q |
348 |
gaagatttagtgtctgaaaccacaaaccctaag--nnnnnnncctccctttaaggttgtttggatata |
413 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36690571 |
gaagatttagtgtctgaaaccacaaaccctaagaaaaaaaaacctccctttaaggttgtttggatata |
36690504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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