View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_90 (Length: 241)
Name: NF17716_low_90
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_90 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 21979771 - 21979987
Alignment:
| Q |
11 |
caaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatataa |
110 |
Q |
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| T |
21979771 |
caaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatataa |
21979870 |
T |
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| Q |
111 |
gcatgaggatagggaatnnnnnnnttattaaggttcactgaagaagcagaatcttctgccgattcaaaatctatcgattgaaattgaagaggtgaacaca |
210 |
Q |
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| T |
21979871 |
gcatgaggatagggaataaaaaaattattaaggttcactgaagaagcagaatcttctgccgattcaaaatctatcgatcgaaattgaagaggtgaacaca |
21979970 |
T |
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| Q |
211 |
aaatggacagaattctt |
227 |
Q |
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| T |
21979971 |
aaatggacagaattctt |
21979987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 50250911 - 50251006
Alignment:
| Q |
11 |
caaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
106 |
Q |
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| T |
50250911 |
caaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
50251006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 48875797 - 48875705
Alignment:
| Q |
14 |
aggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
106 |
Q |
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| T |
48875797 |
aggtatttgtttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaat |
48875705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 37827119 - 37827210
Alignment:
| Q |
15 |
ggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
106 |
Q |
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| T |
37827119 |
ggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaat |
37827210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 48870496 - 48870401
Alignment:
| Q |
11 |
caaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
106 |
Q |
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| T |
48870496 |
caaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaat |
48870401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 48886182 - 48886087
Alignment:
| Q |
11 |
caaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
106 |
Q |
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| T |
48886182 |
caaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaat |
48886087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 47452027 - 47452123
Alignment:
| Q |
10 |
gcaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
106 |
Q |
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| T |
47452027 |
gcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaat |
47452123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 11015641 - 11015735
Alignment:
| Q |
12 |
aaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat |
106 |
Q |
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| T |
11015641 |
aaaggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaat |
11015735 |
T |
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