View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_94 (Length: 238)
Name: NF17716_low_94
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33173640 - 33173418
Alignment:
| Q |
1 |
atgaataagctatggtatatagattaaagaagacaatttaataagagagtcagagctggtagggtatgggcatattctctggactacacaaataaataat |
100 |
Q |
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| T |
33173640 |
atgaataagctatggtatatagattaaagaagacaatttaataagagagtcagagctggtagggtatgggcatattctctggactacacaaataaataat |
33173541 |
T |
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| Q |
101 |
tgtcacatttatcatgttgatataaaaaatatgattgattggttggctccctgcatgaaatcaaatccaaatttttattctatgtttattttatgttttg |
200 |
Q |
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| T |
33173540 |
tgtcacatttatcatgttgatataaaaaatatgattgattggttggctccctgcatgaaatcaaatccaaattttgattctatgtttattttatgttttg |
33173441 |
T |
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| Q |
201 |
ttcatttcttgtgtgacattatt |
223 |
Q |
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| T |
33173440 |
ttcatttcttgtgtgacattatt |
33173418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 33169114 - 33168968
Alignment:
| Q |
68 |
gggcatattctctggactacacaaataaataattgtcacatttatc-----atgttgatataaaaaatatgattgattggttggctccctgcatgaaatc |
162 |
Q |
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| T |
33169114 |
gggcatattgtctggacttcacaaataaattaatgtcacatttattttatgatgttgatataaaaaa-atgattgattga----ctccatgcatgaaatc |
33169020 |
T |
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| Q |
163 |
aaatccaaatttttattctatgtttattttatgttttgttcatttcttgtgtgacattatt |
223 |
Q |
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| T |
33169019 |
atatccaaa--tttattctatcttta-------ttttgttcatttcttgtgtgacattatt |
33168968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 33149945 - 33149901
Alignment:
| Q |
179 |
tctatgtttattttatgttttgttcatttcttgtgtgacattatt |
223 |
Q |
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| T |
33149945 |
tctatgttttttttatactttgttcatttcttgtgtgacattatt |
33149901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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