View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_97 (Length: 236)
Name: NF17716_low_97
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 8993531 - 8993326
Alignment:
| Q |
14 |
aaaattgggattcgacaagggtgtatttttgacaatacaagattcaaattctctaaagaggcaagattaaatgtccatacacgtggaaagcatgccaaag |
113 |
Q |
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| T |
8993531 |
aaaaatgggattcgacaagggtgtattttcgacaatacaagattcaaattctctgaagaggcaagattaaatgtccatacacgtggaaaggatgccaaag |
8993432 |
T |
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| Q |
114 |
atgtcgaaaggatttagtttttagccattagtctgctagttattttcctcacgtatttaagaagtgacaaaatccttaatgaaattgctcgtcccgtact |
213 |
Q |
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| T |
8993431 |
atgtcgaaaggatttagtttttagccattagtctgctagttattttcctcatgtatttaagaagtgacaaagcccttaatgaaattgctcgtcccgtact |
8993332 |
T |
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| Q |
214 |
agtggt |
219 |
Q |
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|||||| |
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| T |
8993331 |
agtggt |
8993326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 41635233 - 41635327
Alignment:
| Q |
66 |
ctaaagaggcaagattaaatgtccatacacgtggaaagcatgccaaagatgtcgaaaggatttagtttttagccattagtctgctagttattttc |
160 |
Q |
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| T |
41635233 |
ctaaagaggcaacatcaaagttccagacacgtggaaaacaagctaaagttgtcgaaaagatttagtttttagctgttagtttgttagttattttc |
41635327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 21166013 - 21166101
Alignment:
| Q |
72 |
aggcaagattaaatgtccatacacgtggaaagcatgccaaagatgtcgaaaggatttagtttttagccattagtctgctagttattttc |
160 |
Q |
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| T |
21166013 |
aggcaaaatcaaatgtcctaacacattgaaggcatgttaaagctgtcgaaaagatgtagtttttagccgttagtctgttagttattttc |
21166101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 21170672 - 21170722
Alignment:
| Q |
110 |
aaagatgtcgaaaggatttagtttttagccattagtctgctagttattttc |
160 |
Q |
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| T |
21170672 |
aaagttgtcgaaaagatgtagtttttagccgttagtctgttagttattttc |
21170722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 6470035 - 6470081
Alignment:
| Q |
93 |
cacgtggaaagcatgccaaagatgtcgaaaggatttagtttttagcc |
139 |
Q |
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| T |
6470035 |
cacgtggaaagcaagtcaaagttgtcgaaaagatttagtttttagcc |
6470081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 27662474 - 27662400
Alignment:
| Q |
55 |
attcaaattctc--taaagaggcaagattaaatgtccatacacgtggaaagcatgccaaagatgtcgaaaggatttagtt |
132 |
Q |
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|||||||||||| | |||||||||||||||| || |||||||||| || ||||||| |||||||||||||||||| |
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| T |
27662474 |
attcaaattctcactgaagaggcaagattaaaggt-----cacgtggaaaacaggccaaagttgtcgaaaggatttagtt |
27662400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 33054135 - 33054071
Alignment:
| Q |
69 |
aagaggcaagattaaatgtccatacacgtggaaagcatgccaaagatgtcgaaaggatttagttt |
133 |
Q |
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| T |
33054135 |
aagaggcaagatcaaaggtccagacaagtggaaaacaagctaaagttgtcgaaaagatttagttt |
33054071 |
T |
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