View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17717_low_1 (Length: 595)

Name: NF17717_low_1
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17717_low_1
NF17717_low_1
[»] chr8 (8 HSPs)
chr8 (124-571)||(39047208-39047659)
chr8 (200-309)||(5076263-5076372)
chr8 (199-309)||(4412597-4412707)
chr8 (138-195)||(9512438-9512495)
chr8 (20-59)||(39047104-39047143)
chr8 (231-308)||(37226988-37227065)
chr8 (196-249)||(5015426-5015479)
chr8 (273-310)||(35161494-35161531)
[»] chr1 (12 HSPs)
chr1 (199-310)||(1181497-1181608)
chr1 (196-310)||(16313900-16314014)
chr1 (196-309)||(7014985-7015098)
chr1 (195-293)||(43514353-43514451)
chr1 (231-310)||(12068014-12068093)
chr1 (214-301)||(9355411-9355498)
chr1 (200-310)||(49000783-49000893)
chr1 (199-309)||(33296425-33296535)
chr1 (244-301)||(16315368-16315425)
chr1 (228-300)||(25901345-25901417)
chr1 (228-309)||(25901396-25901477)
chr1 (200-289)||(44490679-44490768)
[»] chr5 (7 HSPs)
chr5 (199-309)||(12143809-12143919)
chr5 (196-309)||(29195198-29195311)
chr5 (196-310)||(35048688-35048801)
chr5 (196-309)||(2743853-2743966)
chr5 (205-301)||(20882908-20883004)
chr5 (199-310)||(13275031-13275142)
chr5 (196-248)||(40018105-40018157)
[»] chr4 (16 HSPs)
chr4 (199-301)||(22923321-22923423)
chr4 (199-301)||(22927974-22928076)
chr4 (199-301)||(22984253-22984355)
chr4 (199-301)||(22997841-22997943)
chr4 (196-310)||(54185607-54185721)
chr4 (197-309)||(12657194-12657308)
chr4 (196-310)||(45864951-45865065)
chr4 (196-309)||(1939365-1939478)
chr4 (199-296)||(32304853-32304950)
chr4 (220-309)||(50333980-50334069)
chr4 (199-310)||(49285492-49285603)
chr4 (197-310)||(41420632-41420743)
chr4 (137-195)||(43138908-43138966)
chr4 (196-288)||(156058-156150)
chr4 (140-191)||(16935543-16935594)
chr4 (196-243)||(21283799-21283846)
[»] chr6 (4 HSPs)
chr6 (205-310)||(1031791-1031896)
chr6 (199-310)||(7527068-7527179)
chr6 (196-310)||(35018739-35018853)
chr6 (195-243)||(4410234-4410282)
[»] chr2 (4 HSPs)
chr2 (196-310)||(19380219-19380333)
chr2 (196-310)||(5848090-5848204)
chr2 (199-301)||(11816083-11816185)
chr2 (205-248)||(187267-187310)
[»] chr7 (4 HSPs)
chr7 (196-309)||(44226520-44226633)
chr7 (198-301)||(432933-433036)
chr7 (199-309)||(23943729-23943839)
chr7 (135-195)||(47441624-47441684)
[»] chr3 (6 HSPs)
chr3 (199-310)||(46637060-46637171)
chr3 (198-310)||(46182936-46183048)
chr3 (196-248)||(30842114-30842166)
chr3 (195-249)||(20513508-20513562)
chr3 (199-310)||(34436977-34437088)
chr3 (196-288)||(53772300-53772392)
[»] scaffold0001 (1 HSPs)
scaffold0001 (196-248)||(185436-185488)
[»] scaffold0010 (1 HSPs)
scaffold0010 (198-248)||(28599-28649)
[»] scaffold0015 (1 HSPs)
scaffold0015 (199-243)||(33592-33636)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 124 - 571
Target Start/End: Original strand, 39047208 - 39047659
Alignment:
Q  124 gttttattcgagcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta-------cagcgttaattaactaacgca 216  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||       |||||||| ||||||||||||    
T  39047208 gttttattccagcgtgagttaacccacacggcattcgttaagtaacacagagtttaacacttgcgttatttaacctgcgcagcgttagttaactaacgca 39047307  T
Q  217 tagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattctnnnnnn 316  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||  |||||||| ||||||||||  ||||||||          
T  39047308 tagtttttcacttgcgttagttaactagcgcaaggataaatttaaaacgattgtagggcgcgaataaaatgtgttgggtggagaacagaattctaaaaaa 39047407  T
Q  317 nnnntatgtaatgtaatcctttctcaatagtgaaaagcac--catagagtgatcttttggaagtccacacctatgatgtccctccatggcccaaaaagtt 414  Q
        |||||| ||||||| |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39047408 aa--tatgta-tgtaatc-tttctcaatagtgaaaagcacaccatacagtgatcttttggaagtccacacctatgatgtccctccatggcccaaaaagtt 39047503  T
Q  415 tgtaaattcacttccatgaaccgactttccacccttttcacaatagatgcaccattaaagcgcgcttccacggaaacgccatagtttgaactcatccaag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39047504 tgtaaattcacttccatgaaccgactttccacccttttcacaatagatgcaccattaaagcgcgcttccacggaaacgccatagtttgaactcatcccag 39047603  T
Q  515 gttaatttggtattagaccactctacatccacctttaccaatgaattccataccttt 571  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  39047604 gttaatttggtattagaccactccacatccacc-ttaccaatgaattccataccttt 39047659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 5076263 - 5076372
Alignment:
Q  200 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggag 299  Q
    |||| ||||||| ||||||||||| || |||||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  5076263 gttagttaactagcgcatagttttacatttgcgttagttaactaacgcaatggtaaatttgaaacggctgcaaggcgcgagcaacatgtgcagggtggag 5076362  T
Q  300 agtagaattc 309  Q
    || |||||||    
T  5076363 agcagaattc 5076372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 4412707 - 4412597
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| |||| || ||||||||||| || |||||| |||||| |||||||| | |||||||  |||| ||| | |||||||||||||||||||||||  |    
T  4412707 cgttagttaattagcgcatagttttacacttgcgtgagttaattagcgcaaaggtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggtaaa 4412608  T
Q  299 gagtagaattc 309  Q
    ||| |||||||    
T  4412607 gagcagaattc 4412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 9512438 - 9512495
Alignment:
Q  138 tgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 195  Q
    ||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||    
T  9512438 tgagttaactcacgcagcgttagttaaataacacagagtttaacacttgcgttactta 9512495  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 39047104 - 39047143
Alignment:
Q  20 cctagagcatgaatttagaataacagttcatactcttttt 59  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  39047104 cctaaagcatgaatttagaataacagttcatactcttttt 39047143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 37227065 - 37226988
Alignment:
Q  231 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaatt 308  Q
    ||||||||||||||| ||| | |||||||  || | ||| | |||||||||||||||||||||||| |||| ||||||    
T  37227065 cgttagttaactagcacaaaggtaaatttggaatggctgcagggcgcgagcaaaatgtgctgggtgaagagcagaatt 37226988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 5015479 - 5015426
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 249  Q
    |||||||| ||||||| ||||||||||| ||  ||||||||||||||| |||||    
T  5015479 cagcgttagttaactagcgcatagttttacacgtgcgttagttaactaacgcaa 5015426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 35161531 - 35161494
Alignment:
Q  273 ggcgcgagcaaaatgtgctgggtggagagtagaattct 310  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  35161531 ggcgcgagcaaaatgtgcagggtgaagagtagaattct 35161494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 1181497 - 1181608
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||| ||||||| | ||||||||||||||||||||||||    
T  1181497 cgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaaagactgtaggacgcgagcaaaatgtgctgggtgga 1181596  T
Q  299 gagtagaattct 310  Q
    ||| ||||||||    
T  1181597 gagcagaattct 1181608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 16314014 - 16313900
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||| ||| | | |||||||||||||||||||||    
T  16314014 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcatgacgcgagcaaaatgtgctgggt 16313915  T
Q  296 ggagagtagaattct 310  Q
    |||||| | ||||||    
T  16313914 ggagagcataattct 16313900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 7014985 - 7015098
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | |||||||||||||||||||||||    
T  7014985 cagcgttagttaactaacgcgtagtttttcacttgcgttagttaactagcgcaagggtaaatttcgaacggctgcagggcgcgagcaaaatgtgctgggt 7015084  T
Q  296 ggagagtagaattc 309  Q
    |||||| |||||||    
T  7015085 ggagagcagaattc 7015098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 43514451 - 43514353
Alignment:
Q  195 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgg 293  Q
    |||| |||| |||||||  |||||||||| || |||||||||||||||| ||||| | ||||||||||||| ||| | | |||||||||||||||||||    
T  43514451 acagtgttacttaactagtgcatagttttacacttgcgttagttaactaacgcaagggtaaatttaaaacggctgcaggacgcgagcaaaatgtgctgg 43514353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 12068014 - 12068093
Alignment:
Q  231 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattct 310  Q
    ||||||||||||| ||||| |||||||||  |||| ||| | ||||||||||||||||||||||||||||| | ||||||    
T  12068014 cgttagttaactaacgcaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagcataattct 12068093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 9355411 - 9355498
Alignment:
Q  214 gcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 301  Q
    |||||||||| || |||||||||||||||||||||| | |||| |||||||    | | |||||||||||||||||| ||||||||||    
T  9355411 gcatagttttacacttgcgttagttaactagcgcaagggtaaacttaaaacaggcgcagggcgcgagcaaaatgtgcagggtggagag 9355498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 49000783 - 49000893
Alignment:
Q  200 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggag 299  Q
    |||| ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||| |||| ||  | |||||||||||||||||||||||| ||    
T  49000783 gttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttagaacggctacagggcgcgagcaaaatgtgctgggtgaag 49000882  T
Q  300 agtagaattct 310  Q
    || | ||||||    
T  49000883 agcaaaattct 49000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 33296535 - 33296425
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||| ||||||  ||| || |||||| ||||||||| ||||| | |||||||  |||   |||| ||||||||||||||||||||| || |    
T  33296535 cgttagttaactagcgcatacatttacacttgcgtgagttaactaacgcaagggtaaatttggaacagatgtagggcgcgagcaaaatgtgctggatgaa 33296436  T
Q  299 gagtagaattc 309  Q
    ||| |||||||    
T  33296435 gagcagaattc 33296425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 16315368 - 16315425
Alignment:
Q  244 gcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 301  Q
    |||||| |||||||||  |||| ||||| |||||||||||||||||| ||||||||||    
T  16315368 gcgcaaggataaatttggaacggctgtagggcgcgagcaaaatgtgcagggtggagag 16315425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 25901417 - 25901345
Alignment:
Q  228 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggaga 300  Q
    ||||| |||||||||| ||||| | |||||||   ||| || || ||||||||||||||||||||||||||||    
T  25901417 ttgcgctagttaactaacgcaagggtaaatttggtacggctatagggcgcgagcaaaatgtgctgggtggaga 25901345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 25901396 - 25901477
Alignment:
Q  228 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 309  Q
    |||||||||||||||||||||| | | |||||   ||||||| | | || ||||||||||| || ||||||||| |||||||    
T  25901396 ttgcgttagttaactagcgcaaaggtgaatttggtacgactgcaggacgtgagcaaaatgtacttggtggagagcagaattc 25901477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 44490679 - 44490768
Alignment:
Q  200 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtg 289  Q
    |||| ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||  |||| ||| | |||||||||||||||||    
T  44490679 gttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttggaacggctgcagggcgcgagcaaaatgtg 44490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 12143919 - 12143809
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||| |||| ||| | ||||||||||||||||||| ||||||    
T  12143919 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggtaaatttagaacggctgcagggcgcgagcaaaatgtgctaggtgga 12143820  T
Q  299 gagtagaattc 309  Q
    ||| |||||||    
T  12143819 gagcagaattc 12143809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 29195311 - 29195198
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||||||  |||| | | | || ||||||||||| ||||||||    
T  29195311 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggccgcagggagcgagcaaaatatgctgggt 29195212  T
Q  296 ggagagtagaattc 309  Q
    |||||| |||||||    
T  29195211 ggagagcagaattc 29195198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 35048801 - 35048688
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||||||| ||||| | ||||||| ||||| ||| | || ||||||||||||||||||||    
T  35048801 cagcgttagttaactaacgcat-gtttttcacttgcgttaattaactaacgcaagggtaaatttgaaacggctgcagggagcgagcaaaatgtgctgggt 35048703  T
Q  296 ggagagtagaattct 310  Q
    |||||| ||||||||    
T  35048702 ggagagcagaattct 35048688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 2743853 - 2743966
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||| ||||||  ||| || || ||| ||||||||||||||| |||||||||  |||| ||| ||||| |||||||||||||||||||    
T  2743853 cagcgttagttaactagcgcatacatttacacttacgtgagttaactagcgcaaggataaatttggaacggctgcaaggcacgagcaaaatgtgctgggt 2743952  T
Q  296 ggagagtagaattc 309  Q
    | |||| |||||||    
T  2743953 gaagagcagaattc 2743966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 20883004 - 20882908
Alignment:
Q  205 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 301  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | |||| |||||||||  |||||||||||||    
T  20883004 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcatggcgtgagcaaaatacgctgggtggagag 20882908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 13275031 - 13275142
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||| | ||||  ||| || |||||| ||||||||||||||||| |||||||  ||||  || | |||||||||||||||||| ||||| |    
T  13275031 cgttagttaactagcacatacatttacacttgcgtgagttaactagcgcaatggtaaattttgaacggttgcagggcgcgagcaaaatgtgcggggtgaa 13275130  T
Q  299 gagtagaattct 310  Q
    ||| ||||||||    
T  13275131 gaggagaattct 13275142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 40018157 - 40018105
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 248  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  40018157 cagcattagttaactaacgcatagttttacacttgcgttagttaactaacgca 40018105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 22923321 - 22923423
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22923321 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22923420  T
Q  299 gag 301  Q
    |||    
T  22923421 gag 22923423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 22927974 - 22928076
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22927974 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22928073  T
Q  299 gag 301  Q
    |||    
T  22928074 gag 22928076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 22984253 - 22984355
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22984253 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22984352  T
Q  299 gag 301  Q
    |||    
T  22984353 gag 22984355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 22997841 - 22997943
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22997841 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22997940  T
Q  299 gag 301  Q
    |||    
T  22997941 gag 22997943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 54185607 - 54185721
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||| ||||||||||| || |||||||||||||||||||||| | ||||||| ||||| ||| | |||||||||||||| ||| ||||    
T  54185607 cagcgttacttaactagcgcatagttttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcagggcgcgagcaaaatatgcagggt 54185706  T
Q  296 ggagagtagaattct 310  Q
    |||||| ||||||||    
T  54185707 ggagagcagaattct 54185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 12657194 - 12657308
Alignment:
Q  197 agcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaag--gcgcgagcaaaatgtgctggg 294  Q
    ||||||| ||||||||| |||||||||||| ||| |||||||||||||||||| | |||||||  |||| ||| | |  |||||||||||||||||||||    
T  12657194 agcgttagttaactaacacatagtttttcacttgtgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgcgagcaaaatgtgctggg 12657293  T
Q  295 tggagagtagaattc 309  Q
    ||||||| |||||||    
T  12657294 tggagagcagaattc 12657308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 45864951 - 45865065
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||||||||||   |||||||| ||||  || | |||||||||||||||||| ||||    
T  45864951 cagcgttacttaactaacgcatagttttacacttgcattagttaactagcgcaagagtaaatttagaacggttgcagggcgcgagcaaaatgtgcagggt 45865050  T
Q  296 ggagagtagaattct 310  Q
    ||| || ||||||||    
T  45865051 ggatagcagaattct 45865065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 1939365 - 1939478
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||| |||||   ||| || ||||||||||||||||||| || |||||||||  |||| ||| | |||||||||||||||||||||||    
T  1939365 cagcgttagttaactagcgcatgcatttacacttgcgttagttaactagcgtaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggt 1939464  T
Q  296 ggagagtagaattc 309  Q
     ||||| |||||||    
T  1939465 agagagcagaattc 1939478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 32304950 - 32304853
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtg 296  Q
    ||||| ||||||||| ||||||||| || |||||| ||||||||||||||| | |||||||| |||| ||| ||| |||||||||||||||| |||||    
T  32304950 cgttagttaactaacacatagttttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcaagacgcgagcaaaatgtgcagggtg 32304853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 50334069 - 50333980
Alignment:
Q  220 tttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 309  Q
    ||||||| |||||||||||||||||||||| | |||||||  ||||  |||| || ||||||||||||||| |||||||||| |||||||    
T  50334069 tttttcacttgcgttagttaactagcgcaagggtaaatttggaacggttgtagggtgcgagcaaaatgtgccgggtggagagcagaattc 50333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 199 - 310
Target Start/End: Complemental strand, 49285603 - 49285492
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||| ||||||||||| || |||| |||||||| ||  |||| | ||||||||||||| ||  ||| |||||||||||||||| |||||||    
T  49285603 cgttacttaactagcgcatagttttacacttgcattagttaattaatgcaagggtaaatttaaaacggctacaagccgcgagcaaaatgtgcagggtgga 49285504  T
Q  299 gagtagaattct 310  Q
     || ||||||||    
T  49285503 aagcagaattct 49285492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 41420632 - 41420743
Alignment:
Q  197 agcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtg 296  Q
    ||||||| ||||||| ||||||||||| ||  ||||||| |||||||||||||   |||||||  |||| ||| | ||||||| |||||| |||  ||||    
T  41420632 agcgttagttaactagcgcatagttttaca--tgcgttacttaactagcgcaagagtaaatttggaacggctgcatggcgcgaacaaaatatgcaaggtg 41420729  T
Q  297 gagagtagaattct 310  Q
     |||||||||||||    
T  41420730 aagagtagaattct 41420743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 43138966 - 43138908
Alignment:
Q  137 gtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 195  Q
    |||||||||| ||||| ||||| ||||||||| || ||||||||||||||||| |||||    
T  43138966 gtgagttaacacacgcagcgttagttaagtaacacggagtttaacacttgcgtcactta 43138908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 156150 - 156058
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgt 288  Q
    |||||||||||||||| | |||| |||| || |||||||||||||||| || || |||| ||||  || | ||| | ||||||||||||||||    
T  156150 cagcgttaattaactagcacataattttacacttgcgttagttaactaacgtaaggatatatttggaatggctgcagggcgcgagcaaaatgt 156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 16935594 - 16935543
Alignment:
Q  140 agttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgtta 191  Q
    ||||||| ||||| ||||| ||||||||  ||||||||||||||||||||||    
T  16935594 agttaactcacgcagcgttagttaagtagcacagagtttaacacttgcgtta 16935543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 21283846 - 21283799
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaacta 243  Q
    |||||||| ||||||||| ||||||||| || ||||||||||||||||    
T  21283846 cagcgttagttaactaacacatagttttacacttgcgttagttaacta 21283799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 1031791 - 1031896
Alignment:
Q  205 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 304  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | || |||||||||||||||||||||||||| ||    
T  1031791 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctggacggtgcgagcaaaatgtgctgggtggagagcag 1031890  T
Q  305 aattct 310  Q
    | ||||    
T  1031891 agttct 1031896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 7527068 - 7527179
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||||| |||| |||| || |||||| ||||||||||||||| | |||||||| |||| ||| | |||||||||||||||| |||| || |    
T  7527068 cgttagttaactaacacataattttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcagggcgcgagcaaaatgtactggatgaa 7527167  T
Q  299 gagtagaattct 310  Q
    ||| | ||||||    
T  7527168 gagcataattct 7527179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 35018739 - 35018853
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| |||| |||||||||||||| || |||||| |||||||||| || | | |||||||  |||| ||| | | ||||||||||||||| |||||    
T  35018739 cagcgttagttaaataacgcatagttttacacttgcgtgagttaactagtgcgagggtaaatttggaacggctgcaggacgcgagcaaaatgtgttgggt 35018838  T
Q  296 ggagagtagaattct 310  Q
    | |||| ||||||||    
T  35018839 gaagagcagaattct 35018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 4410234 - 4410282
Alignment:
Q  195 acagcgttaattaactaacgcatagtttttcaattgcgttagttaacta 243  Q
    ||||||||| ||||||||  ||||||||| || ||||||||||||||||    
T  4410234 acagcgttagttaactaatacatagttttacacttgcgttagttaacta 4410282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 19380219 - 19380333
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||||||||||  ||| || ||||||||||||||||||||||   |||||||  |||| ||| | |||||||||||||||||||||||    
T  19380219 cagcgttagttaactaacgcatacatttacacttgcgttagttaactagcgcaagagtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggt 19380318  T
Q  296 ggagagtagaattct 310  Q
    |||||| | ||||||    
T  19380319 ggagagcaaaattct 19380333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 5848090 - 5848204
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||| ||||||||||| || || ||||||||||||||||||| | |||||||  || | |||   |||||||||||||||||| ||||    
T  5848090 cagcgttacttaactagcgcatagttttacacttacgttagttaactagcgcaagggtaaatttggaatggctgctgggcgcgagcaaaatgtgcagggt 5848189  T
Q  296 ggagagtagaattct 310  Q
    ||| || ||||||||    
T  5848190 ggatagcagaattct 5848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 11816083 - 11816185
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| |||||||  |||||||||| || |||||| ||||||||||||||| | ||||||| ||||| ||| | ||  ||||||||||||| |||||| |    
T  11816083 cgttagttaactagtgcatagttttacacttgcgtgagttaactagcgcaagggtaaatttgaaacggctgcagggtacgagcaaaatgtgatgggtgaa 11816182  T
Q  299 gag 301  Q
    |||    
T  11816183 gag 11816185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 187267 - 187310
Alignment:
Q  205 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 248  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  187267 ttaactaacgcatagttttacacttgcgttagttaactaacgca 187310  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 44226520 - 44226633
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 295  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||||||| |||| | ||||||| ||||| ||  | ||| ||| |||||||||||||||    
T  44226520 cagcgttagttaactaacacatagtttttcacttgcgttggttaactagagcaagggtaaatttgaaacggctacagggcacgaacaaaatgtgctgggt 44226619  T
Q  296 ggagagtagaattc 309  Q
    |||||| |||||||    
T  44226620 ggagagcagaattc 44226633  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 301
Target Start/End: Original strand, 432933 - 433036
Alignment:
Q  198 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgg 297  Q
    |||||| |||||||||||||| |||| || |||||||||||||||||||||| | ||||||| ||||| |||   || ||||||||||||||| ||||||    
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgccgggtgcgagcaaaatgtgcagggtgg 433032  T
Q  298 agag 301  Q
    ||||    
T  433033 agag 433036  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 23943729 - 23943839
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||| ||||||||||| ||  ||||||||||||||| ||||| | || ||||| |||| ||| |  ||||||||||||||||| ||||| |    
T  23943729 cgttagttaactagcgcatagttttacacctgcgttagttaactaacgcaagggtatatttagaacggctgcagagcgcgagcaaaatgtgcagggtgaa 23943828  T
Q  299 gagtagaattc 309  Q
    ||| |||||||    
T  23943829 gagcagaattc 23943839  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 47441684 - 47441624
Alignment:
Q  135 gcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 195  Q
    |||||||||||| ||||| || || |||||||||  |||||||||||||||||||||||||    
T  47441684 gcgtgagttaactcacgcagctttagttaagtaacgcagagtttaacacttgcgttactta 47441624  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 46637060 - 46637171
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||| ||||||||||| || ||||||||||||||||||| || |||||||||  |||| ||| | |||||||||||||||||| || ||||    
T  46637060 cgttacttaactagcgcatagttttacatttgcgttagttaactagcgtaaggataaatttggaacggctgcatggcgcgagcaaaatgtgcaggatgga 46637159  T
Q  299 gagtagaattct 310  Q
    ||| | ||||||    
T  46637160 gagcataattct 46637171  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 46183048 - 46182936
Alignment:
Q  198 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgg 297  Q
    |||||| |||||||||||||| |||| || |||||||| ||||||||||||| | ||||||| ||||| ||| | || | |||||||||||||  |||||    
T  46183048 gcgttagttaactaacgcataattttacacttgcgttatttaactagcgcaagggtaaatttgaaacggctgcagggtgtgagcaaaatgtgcaaggtgg 46182949  T
Q  298 agagtagaattct 310  Q
    |||| ||||||||    
T  46182948 agagcagaattct 46182936  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 30842114 - 30842166
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 248  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||    
T  30842114 cagcgttagttaactaacgcataggtttacaattacgttagttaactagcgca 30842166  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 20513562 - 20513508
Alignment:
Q  195 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 249  Q
    ||||||||| ||||||| ||||||||||| || |||||||||||||||| |||||    
T  20513562 acagcgttagttaactatcgcatagttttacacttgcgttagttaactaacgcaa 20513508  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 310
Target Start/End: Complemental strand, 34437088 - 34436977
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 298  Q
    ||||| ||||||| ||||||  ||| || |||||| |||||||||||| || | |||||||  |||| ||| | | ||||||||||||||||| | || |    
T  34437088 cgttagttaactagcgcatacatttacacttgcgtgagttaactagcgtaagggtaaatttggaacggctgcaggacgcgagcaaaatgtgcttgatgaa 34436989  T
Q  299 gagtagaattct 310  Q
    ||| ||||||||    
T  34436988 gagcagaattct 34436977  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 53772300 - 53772392
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgt 288  Q
    |||||||||||||||||| |||| ||||||| || ||||| |||||| || ||| | |||||||  |||  ||| | | ||||||||||||||    
T  53772300 cagcgttaattaactaacacataatttttcacttacgttaattaacttgcacaagggtaaattttgaacagctgcaggacgcgagcaaaatgt 53772392  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 185488 - 185436
Alignment:
Q  196 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 248  Q
    |||||||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  185488 cagcgttagttaactaacgcatagttttacacttgcgttagttaactaacgca 185436  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 28649 - 28599
Alignment:
Q  198 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 248  Q
    |||||| |||||||||||||| |||| || |||||||||||||||| ||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaactaacgca 28599  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 33592 - 33636
Alignment:
Q  199 cgttaattaactaacgcatagtttttcaattgcgttagttaacta 243  Q
    ||||| ||||||||||||| ||||| || ||||||||||||||||    
T  33592 cgttagttaactaacgcattgttttacacttgcgttagttaacta 33636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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