View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17717_low_10 (Length: 234)

Name: NF17717_low_10
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17717_low_10
NF17717_low_10
[»] chr4 (6 HSPs)
chr4 (24-225)||(37241905-37242106)
chr4 (43-136)||(37232850-37232943)
chr4 (43-136)||(37253099-37253192)
chr4 (43-136)||(37245017-37245110)
chr4 (171-207)||(37241890-37241926)
chr4 (151-207)||(37245129-37245185)
[»] scaffold0902 (2 HSPs)
scaffold0902 (61-207)||(3298-3441)
scaffold0902 (148-205)||(3483-3540)
[»] scaffold1652 (2 HSPs)
scaffold1652 (43-207)||(413-571)
scaffold1652 (148-206)||(335-393)
[»] scaffold1801 (1 HSPs)
scaffold1801 (87-207)||(122-239)
[»] chr6 (4 HSPs)
chr6 (87-207)||(14248242-14248359)
chr6 (60-207)||(14254049-14254190)
chr6 (57-207)||(14316777-14316924)
chr6 (23-122)||(14351555-14351654)
[»] scaffold1176 (3 HSPs)
scaffold1176 (87-207)||(238-352)
scaffold1176 (87-203)||(1355-1468)
scaffold1176 (146-208)||(114-176)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 37242106 - 37241905
Alignment:
Q  24 cgattgctccctccaccagcgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccacc 123  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  37242106 cgattgctccctccaccagcgctaactcaccggtggcatcttctcccgtacctgtaacgagcagtccttctccttcaccgtccgccatcaactctccacc 37242007  T
Q  124 atcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctgctcct 223  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37242006 atctcctcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctactcct 37241907  T
Q  224 cc 225  Q
    ||    
T  37241906 cc 37241905  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 37232943 - 37232850
Alignment:
Q  43 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 136  Q
    |||| |||||||||| |||||| |||||| |||| | | || |  ||| |||||||| || ||||||||||||||||||||||| |||||||||    
T  37232943 cgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccatctcctcctcct 37232850  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 37253192 - 37253099
Alignment:
Q  43 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 136  Q
    |||| |||||||||| |||||| ||||| ||||| | | ||  | ||| ||||||||||| || |||||||||||||||||||| |||||||||    
T  37253192 cgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcct 37253099  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 37245110 - 37245017
Alignment:
Q  43 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 136  Q
    |||||||||| |||| |||||| ||||||| |||   | |||   ||||||||| ||||||||| ||| ||||||||||||||| |||||||||    
T  37245110 cgctaactcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccaccatctcctcctcct 37245017  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 37241926 - 37241890
Alignment:
Q  171 catcgtcaatctctactcctccaactaaagcaccatc 207  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37241926 catcgtcgatctctactcctccaactaaagcaccatc 37241890  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 37245185 - 37245129
Alignment:
Q  151 tgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 207  Q
    ||||||||||||| | ||| ||||||| ||||||||||||||| || ||||||||||    
T  37245185 tgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

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Target: scaffold0902 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 3441 - 3298
Alignment:
Q  61 atcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcct 160  Q
    |||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||   |||||||||| || ||||| || |||||||||    
T  3441 atctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat---ctcctcctcatgcttccccagcagccgctcct 3345  T
Q  161 gctattactacatcgtcaatctctactcctccaactaaagcaccatc 207  Q
    || |||||| ||||| | |||||||| |||||| |||||||||||||    
T  3344 gccattactccatcggcgatctctacccctccatctaaagcaccatc 3298  T

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Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 3540 - 3483
Alignment:
Q  148 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcacca 205  Q
    ||||||| |||||||| | ||| ||||||| ||||||||||||||| || ||||||||    
T  3540 tgctgccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcacca 3483  T

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Target: scaffold1652 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 413 - 571
Alignment:
Q  43 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcc 142  Q
    |||||||||| |||  |||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| ||     
T  413 cgctaactcaacggtggcatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagct 506  T
Q  143 tcccctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 207  Q
    ||||| || ||| |||||||||||||| ||||| | |||||||| || ||| |||||||||||||    
T  507 tcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaagcaccatc 571  T

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Target: scaffold1652; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 335 - 393
Alignment:
Q  148 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccat 206  Q
    |||||||||||||||| | ||| ||||||| || |||||||||||| || |||||||||    
T  335 tgctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccat 393  T

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Target: scaffold1801 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 122 - 239
Alignment:
Q  87 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 186  Q
    ||||||||||||||||||| |||||||||||||||| ||   |||||||||| || || || || || |||||||| |||||| ||||||| ||||||||    
T  122 gtccttctccttcaccgtctgccatcaactctccacaat---ctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctac 218  T
Q  187 tcctccaactaaagcaccatc 207  Q
     |||||| |||||||| ||||    
T  219 ccctccatctaaagcatcatc 239  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 14248359 - 14248242
Alignment:
Q  87 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 186  Q
    ||||||||||||||||||| ||||||||||||||| |||   |||||||||| || | ||| || ||| ||||||| |||||| ||||| | ||||||||    
T  14248359 gtccttctccttcaccgtctgccatcaactctccatcat---ctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctac 14248263  T
Q  187 tcctccaactaaagcaccatc 207  Q
     |||||| |||||||||||||    
T  14248262 ccctccatctaaagcaccatc 14248242  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 14254190 - 14254049
Alignment:
Q  60 catcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcc 159  Q
    ||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| || || ||||| ||  ||||    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagcttcacctgcagctactcc 14254097  T
Q  160 tgctattactacatcgtcaatctctactcctccaactaaagcaccatc 207  Q
    |||||||||| ||||||| |||||||  |||||| |||||| ||||||    
T  14254096 tgctattactccatcgtcgatctctatccctccatctaaagtaccatc 14254049  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 14316924 - 14316777
Alignment:
Q  57 cagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgc 156  Q
    |||||||| ||||||||||| | | |||  ||||||||  ||||||||| ||||||||||||||| |||   |||||||||| || ||||| || ||| |    
T  14316924 cagcatctgctcccgtacctgtgaagagcagtccttctatttcaccgtctgccatcaactctccatcat---ctcctcctcaagcttcccccgcagccac 14316828  T
Q  157 tcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 207  Q
    ||| || || ||| |||| || |||||||| |||||  |||||||||||||    
T  14316827 tccggccatcactccatcatcgatctctacccctccttctaaagcaccatc 14316777  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 14351654 - 14351555
Alignment:
Q  23 acgattgctccctccaccagcgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccac 122  Q
    |||||| ||| ||| ||| |||||||||||||||    |||||||||| ||||| ||| |||| |||||||||||||| | ||| |||||||||||||||    
T  14351654 acgatttctctctcaaccggcgctaactcaccggtgatatcttctcccatacctgtaaagagtagtccttctccttcatcatccaccatcaactctccac 14351555  T

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Target: scaffold1176 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 238 - 352
Alignment:
Q  87 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 186  Q
    |||||||||||||||| || ||||||||||||  ||||||      |||||| || ||||| || ||| | |||||||||||| ||||||| ||||||||    
T  238 gtccttctccttcaccatctgccatcaactctagaccatc------tcctcaagcttcccccgcagccacccctgctattactccatcgtccatctctac 331  T
Q  187 tcctccaactaaagcaccatc 207  Q
     |||||| |||||||||||||    
T  332 ccctccatctaaagcaccatc 352  T

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Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 1355 - 1468
Alignment:
Q  87 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctcta- 185  Q
    ||||||||||||||||||  |||||||||| ||||||||   |||||||||| || ||||| ||  | ||||| |||| |||| |||||||||||||||     
T  1355 gtccttctccttcaccgtgtgccatcaactgtccaccat---ctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctac 1450  T
Q  186 ctcctccaactaaagcac 203  Q
    | |||||| |||||||||    
T  1451 cccctccatctaaagcac 1468  T

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Target: scaffold1176; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 114 - 176
Alignment:
Q  146 cctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcg 208  Q
    |||||||| ||||||||| | ||| |||| || ||||||||||||||| || |||||||||||    
T  114 cctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcg 176  T

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