View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17717_low_11 (Length: 223)
Name: NF17717_low_11
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17717_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 45312810 - 45312999
Alignment:
| Q |
10 |
ccaagaatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgc |
109 |
Q |
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| T |
45312810 |
ccaataatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgc |
45312909 |
T |
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| Q |
110 |
atttggctgaatatggtgtgcattggaatttcttcttcacgcttgctgctatctcaatccttacatccattattaacattcctccacaat |
199 |
Q |
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| T |
45312910 |
atttggctgaatatggtgtgcattggaatttcttctttacgcttgctgctatctcaatccttacatcctttattaacattcctccacaat |
45312999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 27758540 - 27758687
Alignment:
| Q |
52 |
ttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
151 |
Q |
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| T |
27758540 |
ttgtctaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
27758639 |
T |
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| Q |
152 |
ttgctgctatctcaatccttacatccattattaacattcctccacaat |
199 |
Q |
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| T |
27758640 |
ttgctgctatctcgatccttacatccgttattaacattcctccacaat |
27758687 |
T |
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