View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17717_low_12 (Length: 212)
Name: NF17717_low_12
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17717_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 47419518 - 47419319
Alignment:
| Q |
5 |
agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt |
104 |
Q |
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| T |
47419518 |
agagagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt |
47419419 |
T |
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| Q |
105 |
aggtagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
204 |
Q |
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| T |
47419418 |
aggtagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
47419319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 47391155 - 47390956
Alignment:
| Q |
5 |
agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt |
104 |
Q |
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| T |
47391155 |
agagagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggt |
47391056 |
T |
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| Q |
105 |
aggtagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
204 |
Q |
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| T |
47391055 |
aggcagaatagatgatttttcctaaggtggttagagatagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttct |
47390956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 47421990 - 47421775
Alignment:
| Q |
5 |
agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt |
104 |
Q |
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| T |
47421990 |
agagagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggt |
47421891 |
T |
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| Q |
105 |
aggtagaatag--------------------atgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtaga |
184 |
Q |
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||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| | |
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| T |
47421890 |
aggtagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----a |
47421795 |
T |
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| Q |
185 |
caaaaaccaacacaggttct |
204 |
Q |
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|||||||||| ||||||||| |
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| T |
47421794 |
caaaaaccaatacaggttct |
47421775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 47408289 - 47408183
Alignment:
| Q |
5 |
agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt |
104 |
Q |
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|||||||||||||| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||| |||||||| |
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| T |
47408289 |
agagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggt |
47408190 |
T |
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| Q |
105 |
aggtaga |
111 |
Q |
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||||||| |
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| T |
47408189 |
aggtaga |
47408183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 47424722 - 47424609
Alignment:
| Q |
5 |
agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt |
104 |
Q |
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||||||||||| | ||||| | || |||||||||||||||||||| ||||||||| | |||||||||| | ||||| || ||||||| |||||||| |
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| T |
47424722 |
agagagatgaagtgtccaaacatcaatttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggt |
47424623 |
T |
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| Q |
105 |
aggtagaatagatg |
118 |
Q |
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| T |
47424622 |
acgtagattagatg |
47424609 |
T |
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