View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17717_low_2 (Length: 554)
Name: NF17717_low_2
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17717_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 65 - 337
Target Start/End: Complemental strand, 5430993 - 5430723
Alignment:
| Q |
65 |
ttgagaccgaaatagttagtgactgatgttaagtgcccagtaatgcagtagttaagccatggccctaatgtgtggaaggtatgttccagaaaagggaaaa |
164 |
Q |
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| T |
5430993 |
ttgagaccgatatagttagtgactgatgttaagtgcccagtaatgcagcagttaagccatggcc-taatgtgtggaaggtatgttccacaaaagggaaaa |
5430895 |
T |
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| Q |
165 |
aggtatatgtagacattgtggagtggatgagacttgaatctggatcccatgtagtcaggggattacatattttccacaatcacagtcaaaatcattagat |
264 |
Q |
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| T |
5430894 |
aggtatatgtggacattgtggactggatgagacttgaatctggatcccatgtagtcaggggatcacgta-tttccgcaatcacagtcaaaatcattagat |
5430796 |
T |
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| Q |
265 |
aaagattgaatgattcacgtgcggacttggtatttgaaatcaatttacaatgtcaggatgtgagcattagacg |
337 |
Q |
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| T |
5430795 |
aaagattggatgattcacgtgcggacttggtatttgaaatcaatttacaatgtcaggacgtgagtattagacg |
5430723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 446 - 538
Target Start/End: Complemental strand, 5430438 - 5430346
Alignment:
| Q |
446 |
gatacacaagaggctaccttatgtcttttctgtggtgatgcttgtttgattattattttcttaatattttatctaatagttgatgttcttagt |
538 |
Q |
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| T |
5430438 |
gatacacaagaggctaccttatgtcttttctatggtgatgcttgtttgattattattttattaatatataatgtaatagttgatgttcttagt |
5430346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 5438236 - 5438084
Alignment:
| Q |
182 |
gtggagtggatgagacttgaatctggatcccatgtagtcaggggattacatattttccacaatcacag--tcaaaatcattagataaagattgaatgatt |
279 |
Q |
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| T |
5438236 |
gtggtgtggaggagacttggatctggataccctgtagtcaaggaattatgtattttccacaatcacacaatcaaaatcattacataaagattgtatgatt |
5438137 |
T |
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| Q |
280 |
cacgtgcggacttggtatttgaaatcaatttacaatgtcaggatgtgagcatt |
332 |
Q |
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| T |
5438136 |
cacgttctgacttggtttttgaaatcaatttacaaagtcggaatgtgagcatt |
5438084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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