View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17717_low_4 (Length: 398)
Name: NF17717_low_4
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17717_low_4 |
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| [»] scaffold0051 (9 HSPs) |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: scaffold0051 (Bit Score: 183; Significance: 7e-99; HSPs: 9)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 1109 - 895
Alignment:
| Q |
25 |
aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
124 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1109 |
aggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
1010 |
T |
|
| Q |
125 |
tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacaagattttaacgtcaatttgatctttcattcatttagaag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
1009 |
tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatctcaatttgatctttcattcatttagaag |
910 |
T |
|
| Q |
225 |
attccttagcctttg |
239 |
Q |
| |
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||||||||| ||||| |
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| T |
909 |
attccttaggctttg |
895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 3986 - 3772
Alignment:
| Q |
25 |
aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
124 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3986 |
aggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
3887 |
T |
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| Q |
125 |
tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacaagattttaacgtcaatttgatctttcattcatttagaag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
3886 |
tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatctcaatttgatctttcattcatttagaag |
3787 |
T |
|
| Q |
225 |
attccttagcctttg |
239 |
Q |
| |
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||||||||| ||||| |
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| T |
3786 |
attccttaggctttg |
3772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 8157 - 7943
Alignment:
| Q |
25 |
aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8157 |
aggtatatggaaatttcctactagagctatgaatgatattgcaaaaatttattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
8058 |
T |
|
| Q |
125 |
tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacaagattttaacgtcaatttgatctttcattcatttagaag |
224 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
8057 |
tggtcttgaatcataaatatgattcaaaaagagaccatgttcaagagcaactcttggaacaagattttgatgtcaatttgatatttcattcatttagaag |
7958 |
T |
|
| Q |
225 |
attccttagcctttg |
239 |
Q |
| |
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|||| |||| ||||| |
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| T |
7957 |
attcattaggctttg |
7943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 7174 - 6960
Alignment:
| Q |
25 |
aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
124 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7174 |
aggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
7075 |
T |
|
| Q |
125 |
tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacaagattttaacgtcaatttgatctttcattcatttagaag |
224 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
7074 |
tggtcttgaatcataaaaatgattcaaaaagagaccatgttcaagagcaactcttggaacaagattttgatgtcaatttgatatttcattcatttagaag |
6975 |
T |
|
| Q |
225 |
attccttagcctttg |
239 |
Q |
| |
|
|||| |||| ||||| |
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| T |
6974 |
attcattaggctttg |
6960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 8775 - 8561
Alignment:
| Q |
25 |
aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
124 |
Q |
| |
|
||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775 |
aggtacatgtaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta |
8676 |
T |
|
| Q |
125 |
tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacaagattttaacgtcaatttgatctttcattcatttagaag |
224 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
8675 |
tggtcttgaatcataaaaatgattcaaaaagagaccatgttcaagagcaactcttggaacaagattttgatgtcaatttgatatttcattcatttagaag |
8576 |
T |
|
| Q |
225 |
attccttagcctttg |
239 |
Q |
| |
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||||||||| ||||| |
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| T |
8575 |
attccttaggctttg |
8561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 234 - 383
Target Start/End: Complemental strand, 505 - 356
Alignment:
| Q |
234 |
cctttgccttttaatggaagagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatcctacactttcttgcagaat |
333 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
505 |
cctttgccttttaatggaaaagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatccaacactttcttgcagaat |
406 |
T |
|
| Q |
334 |
ttgcatcttcacatgttggaagtgatttatgtttccttatattgctaact |
383 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
405 |
ttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaact |
356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 234 - 383
Target Start/End: Complemental strand, 3382 - 3233
Alignment:
| Q |
234 |
cctttgccttttaatggaagagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatcctacactttcttgcagaat |
333 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3382 |
cctttgccttttaatggaaaagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatccaacactttcttgcagaat |
3283 |
T |
|
| Q |
334 |
ttgcatcttcacatgttggaagtgatttatgtttccttatattgctaact |
383 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3282 |
ttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaact |
3233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 6575 - 6479
Alignment:
| Q |
234 |
cctttgccttttaatggaagagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatcctacactttcttgcagaat |
333 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
6575 |
cctttgccttttaatggaaaagagtttcaattttcaattttc-----gacataggatgttttttaatgacgtaatttcatccaacactttcttgcagaat |
6481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 7558 - 7462
Alignment:
| Q |
234 |
cctttgccttttaatggaagagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatcctacactttcttgcagaat |
333 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
7558 |
cctttgccttttaatggaaaagagtttcaattttcaattttc-----gacataggatgttttttaatgacgtaatttcatccaacactttcttgcagaat |
7464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 234 - 383
Target Start/End: Original strand, 1111 - 1260
Alignment:
| Q |
234 |
cctttgccttttaatggaagagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatcctacactttcttgcagaat |
333 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
1111 |
cctttgccttttaatggaaaagagtttcaattttcaattttccatctgacataggatgtttcttaatgacgtgatttcatccaacactatcttgcagaat |
1210 |
T |
|
| Q |
334 |
ttgcatcttcacatgttggaagtgatttatgtttccttatattgctaact |
383 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1211 |
ttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaact |
1260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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