View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17717_low_6 (Length: 361)
Name: NF17717_low_6
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17717_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 35149686 - 35150032
Alignment:
| Q |
1 |
aaaatgtacgagttttcatgccatgagtaacgcatgtcatcatcctgatggtctagttcatgttagggacaagggaggtcaggagctacatcctacatat |
100 |
Q |
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| T |
35149686 |
aaaatgtatgagttttcatgccatgagtaacgcatgtcatcatcctgatggtctagttcatgttagggacaagggaggtcaggagctacatcctacatat |
35149785 |
T |
|
| Q |
101 |
tttgaaaatagggattaaaaagaccccgatgacatgcgtgtaaaagagggattgattttagattctaggttgttagagaacgtccttcaaacacctatca |
200 |
Q |
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| T |
35149786 |
tttaaaaatagggattaaaaagaccctgatgacatgcgtgtaaaaaagggattgattttagatactaggttgttagagaatgtccttcaaacacctatca |
35149885 |
T |
|
| Q |
201 |
tcactatgaagagtatacctcatacttatcgtcttgctttctcttaggtattaaaagacactctttatcaggtggatcctaagccatattctgcaggtgc |
300 |
Q |
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| T |
35149886 |
tcactatgaagagtatacctcatacttatcgtcttgcattctcttaggcattaaaagacactctttatcagatggatcctaagccatattctctaggtgc |
35149985 |
T |
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| Q |
301 |
ttgagttcagttgttatggcttcatcgttgctcattacaggtgttca |
347 |
Q |
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| T |
35149986 |
ttgagttcaattgatatggcttcatcgttgctcattacaggtgttca |
35150032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 35127689 - 35128029
Alignment:
| Q |
10 |
gagttttcatgccatgagtaacgcatgtcatcatcctgatggtctagttcatgtta-----gggacaagggaggtcaggagctacatcctacatattttg |
104 |
Q |
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| T |
35127689 |
gagttttcatgtcatgagtcacacatgtcatcatcatgatggtttggtttgtgttattgttggggcaggggaggtcaggagctacatcgtacaaatttta |
35127788 |
T |
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| Q |
105 |
aaaatagggattaaaaagaccccgatgacatgcgtgtaaaagagggattgattttagattctaggttgttagagaacgtccttcaaacacctatcatcac |
204 |
Q |
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||| | | |||||||| |||||||||| |||||||||||||||| | |||||| ||||||||||||| || ||||||||||||||||||||||| |
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| T |
35127789 |
aaaccatctag--aaaagaccatgatgacatgcatgtaaaagagggattggtcttagatgctaggttgttagataaagtccttcaaacacctatcatcac |
35127886 |
T |
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| Q |
205 |
tatgaagagtatacctcatacttatcgtcttgctttctcttaggtattaaaagacactctttatcaggtggatcctaagccatattctgcaggtgcttga |
304 |
Q |
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|||| | | |||||||||||||| ||||||||| |||||| | | ||||||||| |||||||||||||||||||||||||| ||| || |||||| ||| |
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| T |
35127887 |
tatggatattatacctcatacttgtcgtcttgcattctctcatgcattaaaagatgctctttatcaggtggatcctaagccaaattttgtaggtgcctga |
35127986 |
T |
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| Q |
305 |
gttcagttgttatggcttcatcgttgctcattacaggtgttca |
347 |
Q |
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| T |
35127987 |
tttcaattagtgtggcttcatcgttgtgcattacaagtgttca |
35128029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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