View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17717_low_7 (Length: 331)
Name: NF17717_low_7
Description: NF17717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17717_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 38183662 - 38183506
Alignment:
| Q |
19 |
ttaagcctactggtgctaccttggtttcggtgttgtcggcttgtgtccggccgggttgtcttgagcttggggaaatggttcatgagtttatgagtgaaag |
118 |
Q |
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| T |
38183662 |
ttaagcctactggtgctaccttggtttcggtgttgtcggcttgtgcccggtcgggttgtcttgagcttggggaaatggttcatgagtttatgagtgaaag |
38183563 |
T |
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| Q |
119 |
aggttgaagtgggtgtggttcttgcgacgccattggtttatatgtacgcaaagaatg |
175 |
Q |
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| T |
38183562 |
aggttgaagtgggtgtggttcttgtgacgccattggtttatatgtacgcaaagaatg |
38183506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 38183456 - 38183306
Alignment:
| Q |
171 |
gaatgctatgatatttggtttggcttctcat---ggacatgttgaagatgctcttaatttatttgacagtatgaagaaggaggggattgttgttcctaat |
267 |
Q |
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| T |
38183456 |
gaatgctatgatatttggtttggcttctcatcatggacatgttgaagatgctcttaatttatttgagagtatgaagaaggaggggattgttgttcctaat |
38183357 |
T |
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| Q |
268 |
ggtgtcacattcgttgggattctatctgctagttgtcatgcagatttgatt |
318 |
Q |
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| T |
38183356 |
ggtgtcacattcgttgggattctatctgctagttgtcatgcagatttgatt |
38183306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 12011422 - 12011275
Alignment:
| Q |
171 |
gaatgctatgatatttggtttggcttctcatggacatgttgaagatgctcttaatttatttgacagtatgaagaaggaggggattgttgttcctaatggt |
270 |
Q |
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| T |
12011422 |
gaatgctatgatttgtggtttggcttctcatggacatgttgaagatgctcttggtttgtttgagtgtatgaaggaggaggagattgttgttcctaatgct |
12011323 |
T |
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| Q |
271 |
gtcacattcgttgggattctatctgctagttgtcatgcagatttgatt |
318 |
Q |
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| T |
12011322 |
gtcacatttgttggggttttatctgcttgttgtcatgcaggtttgatt |
12011275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 12011639 - 12011484
Alignment:
| Q |
22 |
agcctactggtgctaccttggtttcggtgttgtcggcttgtgtccggccgggttgtcttgagcttggggaaatggttcatgagtttat--gagtgaaaga |
119 |
Q |
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| T |
12011639 |
agcctaatggtgctactttggcttcggtgttgtcggtttgtgctcggtcgggttgtcttgagcttggggaaaggattcatgagtttatgagagtgaaagg |
12011540 |
T |
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| Q |
120 |
ggttgaagtgggtgtggttcttgcgacgccattggtttatatgtacgcaaagaatg |
175 |
Q |
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| T |
12011539 |
ggttgaagtgggagttattcttgggaccgcgttggtttatatgtatgcgaagaatg |
12011484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 38189644 - 38189488
Alignment:
| Q |
21 |
aagcctactggtgctaccttggtttcggtgttgtcggcttgtgtccggccgggttgtcttgagcttggggaaatggttcatgagtttat--gagtgaaag |
118 |
Q |
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| T |
38189644 |
aagcctaagggtgctatcttggttttggtgttgttggcttgtgcccagtcagattgtctgaagcttggggaaatgattcatgagtttataagagcgaaag |
38189545 |
T |
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| Q |
119 |
aggttgaagtgggtgtggttcttgcgacgccattggtttatatgtacgcaaagaatg |
175 |
Q |
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| T |
38189544 |
gggttgaagtgggagtgagtcttgcgacggcattggcttatatgtacgtgaagaatg |
38189488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 21009757 - 21009705
Alignment:
| Q |
171 |
gaatgctatgatatttggtttggcttctcatggacatgttgaagatgctctta |
223 |
Q |
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| T |
21009757 |
gaatgctatgatatgtgctttggcttctcatgtgcatgttgaagatgctctta |
21009705 |
T |
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