View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17718_high_14 (Length: 293)
Name: NF17718_high_14
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_high_14 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 29373333 - 29373055
Alignment:
| Q |
1 |
atatattaacataagcccgacacaagacatg--aaacggtgaggcaacgaaattctatggaccctaaaggcaatgccagccgcagcacacagactcacca |
98 |
Q |
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| T |
29373333 |
atatattaacacaagcccggcacaagacatgctaaacggtgaggcaacgaaactctatggaccctaaaggcaatgccagccgcagcacacagacacacca |
29373234 |
T |
|
| Q |
99 |
tagcagaaaaatcaacaac--ccctgccactctgctggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagagacgaaaactccac |
196 |
Q |
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| T |
29373233 |
tagcagaaaaatcaacagtggccctgccactctgctggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagagacgaaaactccac |
29373134 |
T |
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| Q |
197 |
tacctcctcagtcactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaaagtcc |
275 |
Q |
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| T |
29373133 |
tacctcctcagtcactctctcaggttccaacaccactcataaaagaggccataaacaatcttcaatctactcaaagtcc |
29373055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 10643011 - 10642960
Alignment:
| Q |
133 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
184 |
Q |
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| T |
10643011 |
ggaccagcagccaacaacaccaatcagacaccaaaacagacccaaacagaga |
10642960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 32712827 - 32712878
Alignment:
| Q |
133 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
184 |
Q |
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| T |
32712827 |
ggaccagcagccaacaacaccaatcgaacaccaaaacagacccaaacagaga |
32712878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 11682018 - 11682133
Alignment:
| Q |
54 |
tatggaccctaaaggcaatgccagccgcagcacacagactcaccatagcagaaaaatcaacaacc-cctgccact-ctgctggaccagcagccaacaaac |
151 |
Q |
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| T |
11682018 |
tatggaccctaaaggcaatcccagccgaggcaca--gacaaaccatagcagaaaaaccaacattggcctgctacaactgctgaaccagcagccaacaata |
11682115 |
T |
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| Q |
152 |
ccaatcggacaccaaaac |
169 |
Q |
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| T |
11682116 |
ccaatcggacaccaaaac |
11682133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 3585 - 3534
Alignment:
| Q |
133 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
184 |
Q |
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| T |
3585 |
ggaccagcagccaacaacaccaatcggacaccaaaacagacccaaacagaga |
3534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 23923638 - 23923689
Alignment:
| Q |
133 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
184 |
Q |
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| T |
23923638 |
ggaccagcagccaacaacgccaatcggacaccaaaacagacccaaacagaga |
23923689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 23923520 - 23923561
Alignment:
| Q |
128 |
ctgctggaccagcagccaacaaacccaatcggacaccaaaac |
169 |
Q |
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| T |
23923520 |
ctgctggaccagcagccaacaacaccaattggacaccaaaac |
23923561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 17257131 - 17257070
Alignment:
| Q |
209 |
cactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaa |
270 |
Q |
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|||||||| |||||||||||||||| |||||||||| | || |||||||||| |||||||| |
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| T |
17257131 |
cactcccttgggttccaacaccactcgtaaaagaggcaagaagcaatcttcaacctactcaa |
17257070 |
T |
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