View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17718_high_19 (Length: 212)

Name: NF17718_high_19
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17718_high_19
NF17718_high_19
[»] chr4 (14 HSPs)
chr4 (4-201)||(7970535-7970736)
chr4 (1-51)||(35952613-35952663)
chr4 (1-37)||(3712519-3712555)
chr4 (131-162)||(7682071-7682102)
chr4 (2-37)||(8402752-8402787)
chr4 (1-51)||(15659756-15659806)
chr4 (1-51)||(18576033-18576083)
chr4 (1-58)||(36635337-36635395)
chr4 (1-58)||(56257946-56258001)
chr4 (1-37)||(903935-903971)
chr4 (1-33)||(2234263-2234295)
chr4 (1-37)||(22440610-22440646)
chr4 (8-51)||(32915601-32915645)
chr4 (1-37)||(44081587-44081623)
[»] chr1 (17 HSPs)
chr1 (1-53)||(6427363-6427415)
chr1 (1-47)||(8842714-8842760)
chr1 (1-51)||(44482243-44482293)
chr1 (1-52)||(7918206-7918257)
chr1 (18-57)||(31511970-31512009)
chr1 (3-50)||(34371728-34371775)
chr1 (1-51)||(25361899-25361949)
chr1 (1-51)||(38503333-38503383)
chr1 (1-47)||(40181884-40181930)
chr1 (1-58)||(1486698-1486755)
chr1 (1-46)||(16927186-16927231)
chr1 (4-57)||(20157340-20157393)
chr1 (1-37)||(1864890-1864926)
chr1 (1-37)||(17425103-17425139)
chr1 (1-37)||(19324575-19324611)
chr1 (1-37)||(25098565-25098601)
chr1 (53-89)||(32461392-32461428)
[»] chr2 (9 HSPs)
chr2 (1-88)||(21616775-21616864)
chr2 (3-51)||(35056883-35056931)
chr2 (1-51)||(30527591-30527641)
chr2 (1-47)||(34691805-34691851)
chr2 (1-47)||(34714217-34714263)
chr2 (1-50)||(44860333-44860382)
chr2 (8-52)||(17070936-17070980)
chr2 (8-52)||(18622626-18622670)
chr2 (1-88)||(20539632-20539720)
[»] chr8 (10 HSPs)
chr8 (1-46)||(12606830-12606875)
chr8 (1-53)||(21465425-21465477)
chr8 (1-37)||(31236587-31236623)
chr8 (1-51)||(14634137-14634187)
chr8 (1-50)||(11803272-11803321)
chr8 (1-50)||(11927083-11927132)
chr8 (1-46)||(12559107-12559152)
chr8 (1-33)||(24017452-24017484)
chr8 (1-37)||(34201056-34201092)
chr8 (1-37)||(34897098-34897134)
[»] chr5 (17 HSPs)
chr5 (1-58)||(39205893-39205950)
chr5 (1-50)||(6471886-6471935)
chr5 (1-58)||(38749552-38749609)
chr5 (1-53)||(3966516-3966568)
chr5 (1-37)||(23012418-23012454)
chr5 (1-37)||(32630745-32630781)
chr5 (1-88)||(10298582-10298669)
chr5 (1-52)||(41091252-41091303)
chr5 (1-51)||(22423808-22423858)
chr5 (1-51)||(32766939-32766989)
chr5 (1-46)||(15086484-15086529)
chr5 (1-34)||(30098339-30098372)
chr5 (6-47)||(42029770-42029811)
chr5 (1-37)||(24273040-24273076)
chr5 (1-37)||(24389138-24389174)
chr5 (1-37)||(34879363-34879399)
chr5 (1-57)||(41558644-41558700)
[»] chr3 (17 HSPs)
chr3 (1-86)||(25948848-25948933)
chr3 (1-51)||(8039831-8039881)
chr3 (8-53)||(16789032-16789077)
chr3 (1-36)||(9624654-9624689)
chr3 (1-47)||(8383270-8383316)
chr3 (4-50)||(10455806-10455852)
chr3 (1-51)||(11313796-11313846)
chr3 (1-51)||(16192746-16192796)
chr3 (1-47)||(21419455-21419501)
chr3 (1-43)||(23184076-23184118)
chr3 (1-35)||(29112292-29112326)
chr3 (8-54)||(47775745-47775791)
chr3 (6-47)||(13414487-13414528)
chr3 (1-50)||(15314873-15314922)
chr3 (6-47)||(35222956-35222997)
chr3 (1-46)||(40150572-40150617)
chr3 (1-37)||(29508457-29508493)
[»] chr7 (11 HSPs)
chr7 (1-37)||(3520352-3520388)
chr7 (1-51)||(17307906-17307956)
chr7 (1-51)||(22602706-22602756)
chr7 (1-50)||(35297669-35297718)
chr7 (1-57)||(5548689-5548745)
chr7 (1-68)||(16341509-16341576)
chr7 (1-58)||(11890908-11890965)
chr7 (1-46)||(38143236-38143281)
chr7 (3-51)||(3142074-3142122)
chr7 (1-57)||(5233642-5233698)
chr7 (4-56)||(33384573-33384625)
[»] chr6 (26 HSPs)
chr6 (1-57)||(9025484-9025540)
chr6 (1-48)||(9617447-9617494)
chr6 (1-47)||(7377992-7378038)
chr6 (1-47)||(9629396-9629442)
chr6 (1-58)||(7086808-7086865)
chr6 (1-46)||(13360373-13360418)
chr6 (1-45)||(97819-97863)
chr6 (1-37)||(30866154-30866190)
chr6 (1-36)||(7996389-7996424)
chr6 (1-36)||(8022377-8022412)
chr6 (8-51)||(11424707-11424750)
chr6 (1-91)||(5732471-5732556)
chr6 (1-47)||(7265593-7265639)
chr6 (1-51)||(7723246-7723296)
chr6 (1-35)||(26314646-26314680)
chr6 (1-51)||(26562702-26562752)
chr6 (1-51)||(32320665-32320715)
chr6 (1-58)||(9024165-9024222)
chr6 (1-58)||(10770663-10770720)
chr6 (2-51)||(13815456-13815505)
chr6 (1-46)||(33419186-33419231)
chr6 (1-49)||(7151425-7151473)
chr6 (1-57)||(9027191-9027247)
chr6 (1-37)||(11591880-11591916)
chr6 (1-37)||(13364715-13364751)
chr6 (1-37)||(19040365-19040401)
[»] scaffold0022 (2 HSPs)
scaffold0022 (1-52)||(99906-99957)
scaffold0022 (1-35)||(90856-90890)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-57)||(135302-135358)
[»] scaffold1449 (1 HSPs)
scaffold1449 (8-51)||(1262-1305)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-56)||(28863-28918)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-51)||(44521-44571)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-50)||(9744-9793)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-46)||(240022-240067)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 7970535 - 7970736
Alignment:
Q  4 tgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacgcctaatccaagaagcgtccttgcttcatagctcattaatctctac 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7970535 tgagaaaatcatataattcagtgtaattatatgttttggtgtcgtgtcagacacgcctaatccaagaagtgtccttgcttcatagctcattaatctctac 7970634  T
Q  104 atctttccaagtcttcctctcctatgggtgatgtgactaccctccatc----taatctacttttgttacaacagaatcaagaggtattctgtccacaggt 199  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||||||||||||||| ||    
T  7970635 atctttctaagtcttactctcctatgggtgatgtgactaccctccatctaattaatctacttttgttacaacagaatctagaggtattctgtccacatgt 7970734  T
Q  200 tc 201  Q
    ||    
T  7970735 tc 7970736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35952663 - 35952613
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||| |||||||||||||||||||||||||||||| |  ||||||||||    
T  35952663 atttgataaaatcatataattcaatgtaattatatgtatcagtgtcgtgtc 35952613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3712555 - 3712519
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  3712555 atttgagaaaatcatgtaattcaatgtaattatatgt 3712519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 7682071 - 7682102
Alignment:
Q  131 gtgatgtgactaccctccatctaatctacttt 162  Q
    ||||||||||||||||||||||||||||||||    
T  7682071 gtgatgtgactaccctccatctaatctacttt 7682102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 8402787 - 8402752
Alignment:
Q  2 tttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  8402787 tttgagaaaatcatataattcagtgtaattatatgt 8402752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15659806 - 15659756
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||  |||||||  ||||||||||||| |||||||||||||    
T  15659806 atttgagaaaatctcataattcggtgtaattatatgtgttggtgtcgtgtc 15659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18576083 - 18576033
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||||  ||||||||||||| |||||||| ||||    
T  18576083 atttgagaaaatcacataattcggtgtaattatatgtgttggtgtcatgtc 18576033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36635337 - 36635395
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgt-cgtgtcagacacg 58  Q
    |||||||||||||| |||||||| ||||||||||||| || ||||  ||||||||||||    
T  36635337 atttgagaaaatcacataattcagtgtaattatatgtgttcgtgtgagtgtcagacacg 36635395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 56257946 - 56258001
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    ||||||||||||||||||||||| ||||||||| ||| |  ||||||||||| |||||    
T  56257946 atttgagaaaatcatataattcagtgtaattatgtgtct--gtgtcgtgtcaaacacg 56258001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 903935 - 903971
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  903935 atttgagaaaatcacataattcagtgtaattatatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2234263 - 2234295
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattat 33  Q
    |||||||||||||| ||||||||||||||||||    
T  2234263 atttgagaaaatcacataattcaatgtaattat 2234295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22440646 - 22440610
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  22440646 atttgagaaaatcacataattcagtgtaattatatgt 22440610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 32915645 - 32915601
Alignment:
Q  8 aaaatcatataattcaatgtaattatatgttttgg-tgtcgtgtc 51  Q
    ||||||| |||||||||||||||||||||||| || |||||||||    
T  32915645 aaaatcacataattcaatgtaattatatgtttcggttgtcgtgtc 32915601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44081623 - 44081587
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||| |||||||||||||| |||||||||||||||    
T  44081623 atttgaaaaaatcatataatttaatgtaattatatgt 44081587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6427363 - 6427415
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcag 53  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  6427363 atttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcag 6427415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8842760 - 8842714
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  8842760 atttgagaaaaacatataatttaatgtaattatatgtattggtgtcg 8842714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44482243 - 44482293
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||||| ||||||||||||| | |||||||||||    
T  44482243 atttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 44482293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7918257 - 7918206
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtca 52  Q
    |||||||||||||| |||||||| ||||||||||||| |  |||||||||||    
T  7918257 atttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtca 7918206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 31512009 - 31511970
Alignment:
Q  18 aattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  31512009 aattcaatgtaattatatgtgttggtgtcctgtcagacac 31511970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 34371728 - 34371775
Alignment:
Q  3 ttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||||||||||| |||||||| ||||||||||||| | ||||||||||    
T  34371728 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgt 34371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25361899 - 25361949
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||||| ||||||||||||| |  ||||||||||    
T  25361899 atttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtc 25361949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38503333 - 38503383
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||||||| |||| ||||||||||||| | |||||| ||||    
T  38503333 atttgagaaaatcatatatttcagtgtaattatatgtgtcggtgtcctgtc 38503383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40181884 - 40181930
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    |||||||||||||| |||||||| ||||||||||||| | |||||||    
T  40181884 atttgagaaaatcacataattcagtgtaattatatgtatcggtgtcg 40181930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1486755 - 1486698
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    |||||| ||||||| |||||||| |||||||||| || | ||||||||||| ||||||    
T  1486755 atttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacg 1486698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16927231 - 16927186
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    |||||| |||||||||||||||| ||||||||||| | ||||||||    
T  16927231 atttgaaaaaatcatataattcagtgtaattatatatgttggtgtc 16927186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 20157393 - 20157340
Alignment:
Q  4 tgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    ||||||||||| |||||||| |||||| |||||| | ||||||||||| |||||    
T  20157393 tgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtccgacac 20157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1864926 - 1864890
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  1864926 atttgagaaaatcacataattcagtgtaattatatgt 1864890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17425139 - 17425103
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  17425139 atttgataaaatcacataattcaatgtaattatatgt 17425103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19324575 - 19324611
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  19324575 atttgagaaaatcacataattcagtgtaattatatgt 19324611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25098601 - 25098565
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  25098601 atttgagaaaatcacataattcagtgtaattatatgt 25098565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 32461428 - 32461392
Alignment:
Q  53 gacacgcctaatccaagaagcgtccttgcttcatagc 89  Q
    |||||||||||||||||||| |||| |||||||||||    
T  32461428 gacacgcctaatccaagaagtgtccgtgcttcatagc 32461392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21616775 - 21616864
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc--gtgtcagacacgcctaatccaagaagcgtccttgcttcatag 88  Q
    |||||||||||||| |||||||| ||||||||||||| |  |||||  ||| | |||||| ||||||||||||| |||| ||||||||||    
T  21616775 atttgagaaaatcacataattcagtgtaattatatgtgtacgtgtccggtgccggacacggctaatccaagaagtgtccgtgcttcatag 21616864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 35056883 - 35056931
Alignment:
Q  3 ttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    ||||||||| ||||||||||| ||||||||||||| | |||||||||||    
T  35056883 ttgagaaaaccatataattcagtgtaattatatgtgtcggtgtcgtgtc 35056931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30527641 - 30527591
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    ||||||||||||||||||||| | ||||||||||||| | ||| |||||||    
T  30527641 atttgagaaaatcatataatttagtgtaattatatgtgtcggtatcgtgtc 30527591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34691851 - 34691805
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    |||||| |||||||||||||||| ||||||||||||| | |||||||    
T  34691851 atttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34691805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34714263 - 34714217
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    |||||| |||||||||||||||| ||||||||||||| | |||||||    
T  34714263 atttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34714217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44860333 - 44860382
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||||||||||||  |||||||| ||||||||||||| | ||||||||||    
T  44860333 atttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgt 44860382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 17070980 - 17070936
Alignment:
Q  8 aaaatcatataattcaatgtaattatatgttttggtgtcgtgtca 52  Q
    ||||| ||||||||| |||||||||||| | ||||||||||||||    
T  17070980 aaaattatataattcgatgtaattatatatattggtgtcgtgtca 17070936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 18622626 - 18622670
Alignment:
Q  8 aaaatcatataattcaatgtaattatatgttttggtgtcgtgtca 52  Q
    ||||||| |||||||| |||||||||| || ||||||||||||||    
T  18622626 aaaatcacataattcagtgtaattatacgtgttggtgtcgtgtca 18622670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20539720 - 20539632
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc-agacacgcctaatccaagaagcgtccttgcttcatag 88  Q
    |||||| |||||||||||||| | |||||||| | || | ||||||||| | |||||||||| |||| || || |||| ||||||||||    
T  20539720 atttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcgtggcgagacacgcctgatccgaggagtgtccgtgcttcatag 20539632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12606875 - 12606830
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||    
T  12606875 atttgagaaaatcatataattcaatgtaattatatgtgtcggtgtc 12606830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21465425 - 21465477
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcag 53  Q
    |||||| ||||||||||||||| ||||||||| | || |||||||||||||||    
T  21465425 atttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcgtgtcag 21465477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31236623 - 31236587
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31236623 atttgagaaaatcacataattcaatgtaattatatgt 31236587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14634187 - 14634137
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||| ||||||| |||||||||| ||||||||||| | |||||||||||||    
T  14634187 atttaagaaaattatataattcagtgtaattatatttgttggtgtcgtgtc 14634137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11803272 - 11803321
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||| ||||||||| |||||||| ||||||||||||| ||||||| ||||    
T  11803272 atttaagaaaatcacataattcagtgtaattatatgtgttggtgttgtgt 11803321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11927132 - 11927083
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||||| ||||||| |||||||| ||||||||||||| | ||||||||||    
T  11927132 atttgataaaatcacataattcagtgtaattatatgtgtcggtgtcgtgt 11927083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12559152 - 12559107
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    |||||||||||| |||||||||| |||||| |||||| ||||||||    
T  12559152 atttgagaaaatgatataattcagtgtaatcatatgtattggtgtc 12559107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24017484 - 24017452
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattat 33  Q
    |||||||| ||||||||||||||||||||||||    
T  24017484 atttgagacaatcatataattcaatgtaattat 24017452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34201092 - 34201056
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||| | ||||||||||||||||||||||    
T  34201092 atttgagaaaatgacataattcaatgtaattatatgt 34201056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34897098 - 34897134
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  34897098 atttgagaaaatcacataattcagtgtaattatatgt 34897134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39205893 - 39205950
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    |||||||||||||||||||||   ||||||||||||| ||||||||||||| ||||||    
T  39205893 atttgagaaaatcatataattaggtgtaattatatgtgttggtgtcgtgtccgacacg 39205950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6471935 - 6471886
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||||||||||||| |||||||| ||||||||||||| | ||||||||||    
T  6471935 atttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcgtgt 6471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38749609 - 38749552
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    |||||| ||||| | |||||||||||||||||||||| ||||||| ||||| ||||||    
T  38749609 atttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggacacg 38749552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3966516 - 3966568
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcag 53  Q
    |||||||||||||| | |||||| ||||||||||||| | |||||||||||||    
T  3966516 atttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcag 3966568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23012454 - 23012418
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  23012454 atttgagaaaatcatataatttaatgtaattatatgt 23012418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32630781 - 32630745
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32630781 atttgagaaaattatataattcaatgtaattatatgt 32630745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10298582 - 10298669
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacgcctaatccaagaagcgtccttgcttcatag 88  Q
    |||||| ||| ||| ||||| ||||||||||| | || | |||||||| || |||||||||||||| || || |||| ||||||||||    
T  10298582 atttgaaaaagtcacataatacaatgtaattacaagtgtcggtgtcgtatcggacacgcctaatccgaggagtgtccgtgcttcatag 10298669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41091303 - 41091252
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtca 52  Q
    |||||||||||||| |||||||| ||||||||||||| | | ||||||||||    
T  41091303 atttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtca 41091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22423858 - 22423808
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||||||| ||||||||| | | |||||||||||    
T  22423858 atttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtc 22423808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32766989 - 32766939
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||  | |||||||||||||||||||| || ||||||||||    
T  32766989 atttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtc 32766939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15086484 - 15086529
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    ||||||||||||||||||||  ||||||||||||||| | ||||||    
T  15086484 atttgagaaaatcatataatgtaatgtaattatatgtgtcggtgtc 15086529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30098339 - 30098372
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattata 34  Q
    |||||||||||||| |||||||||||||||||||    
T  30098339 atttgagaaaatcacataattcaatgtaattata 30098372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 42029770 - 42029811
Alignment:
Q  6 agaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    ||||||||| |||||||||||||||||||||| | |||||||    
T  42029770 agaaaatcacataattcaatgtaattatatgtatcggtgtcg 42029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24273076 - 24273040
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  24273076 atttgagaaaatcacataattcagtgtaattatatgt 24273040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24389138 - 24389174
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  24389138 atttgagaaaatcacataattcagtgtaattatatgt 24389174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34879363 - 34879399
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  34879363 atttgagaaaatcatataattcagtgtaataatatgt 34879399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41558700 - 41558644
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    |||||||||||| | ||||||||||||||||| |||| |  |||||||||| |||||    
T  41558700 atttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcggacac 41558644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 25948933 - 25948848
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacgcctaatccaagaagcgtccttgcttcat 86  Q
    |||||| ||||||| |||||||| |||||||||| || ||||||||||||| ||||||  ||||||||| |  |||| ||||||||    
T  25948933 atttgaaaaaatcacataattcagtgtaattataagtgttggtgtcgtgtcggacacgtgtaatccaaggaatgtccgtgcttcat 25948848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8039881 - 8039831
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||| |||||||||| ||||||||||||| | |||||||||||    
T  8039881 atttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtc 8039831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 16789032 - 16789077
Alignment:
Q  8 aaaatcatataattcaatgtaattatatgttttggtgtcgtgtcag 53  Q
    |||||||||||||||| |||||||||| || |||||||||||||||    
T  16789032 aaaatcatataattcagtgtaattataagtgttggtgtcgtgtcag 16789077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9624654 - 9624689
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatg 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  9624654 atttgagaaaatcacataattcaatgtaattatatg 9624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8383270 - 8383316
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    ||||||||||||||||||||||| |||||||||| || | |||||||    
T  8383270 atttgagaaaatcatataattcagtgtaattataagtgtcggtgtcg 8383316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 10455806 - 10455852
Alignment:
Q  4 tgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||||||||||||||| | | ||||||||||||| ||||||||||||    
T  10455806 tgagaaaatcatataactaagtgtaattatatgtgttggtgtcgtgt 10455852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11313846 - 11313796
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||| | ||||||||||||| || ||||||||||    
T  11313846 atttgagaaaatcacataatttagtgtaattatatgtgttagtgtcgtgtc 11313796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16192796 - 16192746
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||| | |||||||| ||||||||||||| ||| |||||||||    
T  16192796 atttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtc 16192746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21419501 - 21419455
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    |||| ||||||| |||||||||||||||||||||| | |||||||||    
T  21419501 atttaagaaaataatataattcaatgtaattatatatgttggtgtcg 21419455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23184118 - 23184076
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggt 43  Q
    |||||| ||||||||||||||| |||||||||||||| |||||    
T  23184118 atttgacaaaatcatataattctatgtaattatatgtgttggt 23184076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29112326 - 29112292
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  29112326 atttgagaaaatcatataattcagtgtaattatat 29112292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 47775745 - 47775791
Alignment:
Q  8 aaaatcatataattcaatgtaattatatgttttggtgtcgtgtcaga 54  Q
    ||||| ||||||||||||||||||| |||| ||||||| ||||||||    
T  47775745 aaaatgatataattcaatgtaattacatgtgttggtgttgtgtcaga 47775791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 13414487 - 13414528
Alignment:
Q  6 agaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    ||||||||| |||||||||||||||||||||| | |||||||    
T  13414487 agaaaatcaaataattcaatgtaattatatgtgtcggtgtcg 13414528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15314922 - 15314873
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||||| ||||||| |||||| | ||||||||||||| ||||||||||||    
T  15314922 atttgaaaaaatcacataatttagtgtaattatatgtgttggtgtcgtgt 15314873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 35222956 - 35222997
Alignment:
Q  6 agaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    ||||||||| |||||||||||||||||||||| | |||||||    
T  35222956 agaaaatcacataattcaatgtaattatatgtgtcggtgtcg 35222997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40150617 - 40150572
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    |||||||||||| ||||||||||||||||| |||||| | ||||||    
T  40150617 atttgagaaaatgatataattcaatgtaatcatatgtgtcggtgtc 40150572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29508457 - 29508493
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||| |||||||||||||||| |||||||||||||    
T  29508457 atttgaaaaaatcatataattcagtgtaattatatgt 29508493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3520388 - 3520352
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  3520388 atttgagaaaatcatataattcaatgtaattatatgt 3520352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17307906 - 17307956
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||| | |||||||| ||||||||||||| |||||||||||||    
T  17307906 atttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtc 17307956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22602756 - 22602706
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||||| ||||||||||||| | |||||||||||    
T  22602756 atttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 22602706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35297718 - 35297669
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    |||||||||||||| |||||||| | ||||||||||| ||||||||||||    
T  35297718 atttgagaaaatcacataattcattataattatatgtgttggtgtcgtgt 35297669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5548689 - 5548745
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    |||||||||||||| |||||||| ||||||||||||| |  |||||||||| |||||    
T  5548689 atttgagaaaatcaaataattcagtgtaattatatgtgtcagtgtcgtgtcggacac 5548745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 16341509 - 16341576
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacgcctaatccaa 68  Q
    |||||||||||||| |||||| | |||||||||||||   ||||||||||| ||||| | ||||||||    
T  16341509 atttgagaaaatcacataattaagtgtaattatatgtgccggtgtcgtgtcggacacacataatccaa 16341576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11890965 - 11890908
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    |||||| |||||||||||||||| |||||||||  || | ||||||||||| ||||||    
T  11890965 atttgaaaaaatcatataattcagtgtaattatgagtgtaggtgtcgtgtcggacacg 11890908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38143236 - 38143281
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    |||||| ||||||| |||||| ||||||||||||||| ||||||||    
T  38143236 atttgaaaaaatcacataatttaatgtaattatatgtgttggtgtc 38143281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 3142122 - 3142074
Alignment:
Q  3 ttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    ||||| |||||||||||||||||||||| |||||| | ||||| |||||    
T  3142122 ttgagtaaatcatataattcaatgtaatcatatgtgtcggtgttgtgtc 3142074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5233642 - 5233698
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    |||||||||||||| |||||  | ||||||||||||| ||||||| ||||| |||||    
T  5233642 atttgagaaaatcacataatctagtgtaattatatgtgttggtgttgtgtccgacac 5233698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 33384625 - 33384573
Alignment:
Q  4 tgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagaca 56  Q
    |||||||||| ||||||| | ||||||||||||| ||||||| ||||| ||||    
T  33384625 tgagaaaatcctataatttagtgtaattatatgtgttggtgtggtgtcggaca 33384573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9025540 - 9025484
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    |||||||||||||| |||||||| ||||||||||||| | ||||||||||| |||||    
T  9025540 atttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtccgacac 9025484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9617447 - 9617494
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgt 48  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||    
T  9617447 atttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7377992 - 7378038
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    |||||||||||||| |||||||||||||||||||||| | |||||||    
T  7377992 atttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 7378038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9629396 - 9629442
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    |||||||||||||| |||||||||||||||||||||| | |||||||    
T  9629396 atttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 9629442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7086808 - 7086865
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    |||||||||||||| |||||| | ||||||||||||| | ||||| ||||||||||||    
T  7086808 atttgagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtcagacacg 7086865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13360418 - 13360373
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||    
T  13360418 atttgagaaaatcacataattcagtgtaattatatgtttcggtgtc 13360373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 97863 - 97819
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgt 45  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||    
T  97863 atttgagaaaatcatatgattaaatgtaattatatattttggtgt 97819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30866190 - 30866154
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30866190 atttgagaaaatcacataattcaatgtaattatatgt 30866154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7996424 - 7996389
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatg 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7996424 atttgagaaaatcatataattcagtgtaattatatg 7996389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8022377 - 8022412
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatg 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8022377 atttgagaaaatcatataattcagtgtaattatatg 8022412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 11424750 - 11424707
Alignment:
Q  8 aaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||    
T  11424750 aaaatcatataattcaatataattatatgtgttggtgttgtgtc 11424707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5732556 - 5732471
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacgcctaatccaagaagcgtccttgcttcatagctc 91  Q
    |||||||||||||| ||| || | ||||||||||||| | |||||||     |||||||||||||| || || |||| |||||||||||||    
T  5732556 atttgagaaaatcacatattttagtgtaattatatgtgtcggtgtcg-----gacacgcctaatccgaggagtgtccatgcttcatagctc 5732471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7265639 - 7265593
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcg 47  Q
    |||||||||||||| |||||||| ||||||||||||| | |||||||    
T  7265639 atttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7723296 - 7723246
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||||||||||||   ||||||||||| | |||||||||||    
T  7723296 atttgagaaaatcatataattcagcataattatatgtatcggtgtcgtgtc 7723246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26314680 - 26314646
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatat 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  26314680 atttgaaaaaatcatataattcaatgtaattatat 26314646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26562702 - 26562752
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||||| ||||||||||||| | | |||||||||    
T  26562702 atttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtc 26562752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32320715 - 32320665
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||| ||||||| |||||||||||| ||||||||| | |||||||||||    
T  32320715 atttgataaaatcacataattcaatgtcattatatgtatcggtgtcgtgtc 32320665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9024222 - 9024165
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    |||||||||||| | ||||||||||||||| |||||| |  |||||||||| ||||||    
T  9024222 atttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacacg 9024165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10770720 - 10770663
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacacg 58  Q
    |||||| ||||||| |||||||| |||||||| | || | ||||||||||||||||||    
T  10770720 atttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcagacacg 10770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 13815456 - 13815505
Alignment:
Q  2 tttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    ||||||||||||| ||||||||||| | |||||||| | |||||||||||    
T  13815456 tttgagaaaatcacataattcaatgaagttatatgtctcggtgtcgtgtc 13815505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33419186 - 33419231
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    |||||| ||| | |||||||||||||||||||||||| ||||||||    
T  33419186 atttgaaaaattgatataattcaatgtaattatatgtgttggtgtc 33419231  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7151425 - 7151473
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtg 49  Q
    |||||| ||||||| |||||| | ||||||||||||| |||||||||||    
T  7151425 atttgaaaaaatcacataattaagtgtaattatatgtgttggtgtcgtg 7151473  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9027191 - 9027247
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    |||||||| ||||| |||||||  ||||||||||||| | ||||||||||| |||||    
T  9027191 atttgagataatcacataattccgtgtaattatatgtgtcggtgtcgtgtccgacac 9027247  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11591916 - 11591880
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  11591916 atttgagaaaatcacataattcagtgtaattatatgt 11591880  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13364751 - 13364715
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  13364751 atttgagaaaatcatataattcagtgtaatcatatgt 13364715  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19040365 - 19040401
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgt 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  19040365 atttgagaaaatcacataattcagtgtaattatatgt 19040401  T

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Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 99906 - 99957
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtca 52  Q
    |||| ||||||| | |||||||||||||||||||||| ||||||||||||||    
T  99906 attttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtca 99957  T

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Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 90856 - 90890
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  90856 atttgagaaaatcatataattcagtgtaattatat 90890  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 135358 - 135302
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagacac 57  Q
    |||||||||||||| |||||||  ||||||||||||| | ||||||||||| |||||    
T  135358 atttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcgtgtccgacac 135302  T

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Target: scaffold1449 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 1305 - 1262
Alignment:
Q  8 aaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||    
T  1305 aaaattatataattcgatgtaattatatattttggtgtcgtgtc 1262  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28863 - 28918
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtcagaca 56  Q
    |||| ||||||||  |||||||||||||||||||||| | ||||| ||||||||||    
T  28863 atttaagaaaatcgcataattcaatgtaattatatgtgtcggtgttgtgtcagaca 28918  T

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Target: scaffold0123 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44571 - 44521
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgtc 51  Q
    |||||||||||||| |||||||| ||||||||||||| | ||| |||||||    
T  44571 atttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtc 44521  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9793 - 9744
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtcgtgt 50  Q
    ||||||||||||||  ||||||| ||||||||||||| | ||||||||||    
T  9793 atttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcgtgt 9744  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 240067 - 240022
Alignment:
Q  1 atttgagaaaatcatataattcaatgtaattatatgttttggtgtc 46  Q
    |||||||||||| ||||||||||||||||| |||||| | ||||||    
T  240067 atttgagaaaataatataattcaatgtaatcatatgtgtcggtgtc 240022  T

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