View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17718_high_7 (Length: 370)
Name: NF17718_high_7
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 5 - 355
Target Start/End: Complemental strand, 1044275 - 1043925
Alignment:
| Q |
5 |
gacagaaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtga |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1044275 |
gacagtaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaaaggtga |
1044176 |
T |
|
| Q |
105 |
tagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1044175 |
tagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgagggatccaccgtattca |
1044076 |
T |
|
| Q |
205 |
tctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaatttacatcacat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
1044075 |
tctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacat |
1043976 |
T |
|
| Q |
305 |
tgaacatgttaagtgacttgaaaaatgtccttgtgctttaaagcaacaaat |
355 |
Q |
| |
|
||| |||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
1043975 |
tgattatgttaggagatttgaaaaatgtccttgtgctttaaagcaacaaat |
1043925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 1033888 - 1033578
Alignment:
| Q |
5 |
gacagaaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtga |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||||| || ||| ||||||||||| |
|
|
| T |
1033888 |
gacagtaaagaatattgtacttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgcaaaaggtga |
1033789 |
T |
|
| Q |
105 |
tagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattca |
204 |
Q |
| |
|
|| ||||||||||||| | ||||||||||||||||||||||| || ||||||||||||| | |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
1033788 |
taatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatccaccatattca |
1033689 |
T |
|
| Q |
205 |
tctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaatttacatcacat |
304 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
1033688 |
tctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaaaacctgcaatttgcatcacat |
1033589 |
T |
|
| Q |
305 |
tgaacatgtta |
315 |
Q |
| |
|
||| ||||||| |
|
|
| T |
1033588 |
tgagcatgtta |
1033578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 1071611 - 1071327
Alignment:
| Q |
11 |
aaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtgatagtct |
110 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| |||||||||||| || || ||||||||| || ||||| ||| |||||||||||||||| ||| |
|
|
| T |
1071611 |
aaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattctgaatactctgcaaaaggtgataatct |
1071512 |
T |
|
| Q |
111 |
aattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatctgtt |
210 |
Q |
| |
|
||||||||| | |||| |||||||||||| |||| |||||||||||||||| || ||| |||||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
1071511 |
tattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacggttctcaagggatccaccatactcatctgtc |
1071412 |
T |
|
| Q |
211 |
ctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaattt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
1071411 |
ctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaattt |
1071327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 1065870 - 1065600
Alignment:
| Q |
25 |
ttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtgatagtctaattccaactttat |
124 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| ||||||||| || ||||||||| || ||||||||||||| ||| ||||||||| | | |
|
|
| T |
1065870 |
ttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattctgcatactccgcaaaaggtgataatcttattccaactcttt |
1065771 |
T |
|
| Q |
125 |
ctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcacttt |
224 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| || ||||||||| || ||||| || || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
1065770 |
ctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgacagcggttctccagagacccaccatattcatctgtcctgtcattcacttt |
1065671 |
T |
|
| Q |
225 |
atctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaattt |
295 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
1065670 |
atctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaattt |
1065600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 1640668 - 1640958
Alignment:
| Q |
5 |
gacagaaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtga |
104 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||||||| ||| |||||||| | |||||||||||| || |||| |||||||||| ||||| || |
|
|
| T |
1640668 |
gacagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcga |
1640767 |
T |
|
| Q |
105 |
tagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattca |
204 |
Q |
| |
|
|| ||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| || || |||| ||||||||||| | |
|
|
| T |
1640768 |
taatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaagggttccaccgtattta |
1640867 |
T |
|
| Q |
205 |
tctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaattt |
295 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
1640868 |
tcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaaaacctgcaattt |
1640958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 1058778 - 1058508
Alignment:
| Q |
25 |
ttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtgatagtctaattccaactttat |
124 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||||||||| | ||| |
|
|
| T |
1058778 |
ttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctat |
1058679 |
T |
|
| Q |
125 |
ctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcacttt |
224 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||| | || |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
1058678 |
ctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttg |
1058579 |
T |
|
| Q |
225 |
atctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaattt |
295 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
1058578 |
atctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaattt |
1058508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 1053513 - 1053243
Alignment:
| Q |
25 |
ttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtgatagtctaattccaactttat |
124 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| | |||||| |||||| || ||| || ||| | |||||||||||| | | ||||||||| | | |
|
|
| T |
1053513 |
ttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatctccaaatttttcaaaaggtgataattttattccaactcttt |
1053414 |
T |
|
| Q |
125 |
ctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcacttt |
224 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||| ||||| | ||||| ||||||||| || |||| |||||| ||||||||||||||||| || |||| |
|
|
| T |
1053413 |
ctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttccaccatattcatctgttctgtcgtttgcttt |
1053314 |
T |
|
| Q |
225 |
atctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaattt |
295 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
1053313 |
atctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaacctacaattt |
1053243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 25 - 286
Target Start/End: Complemental strand, 1046838 - 1046577
Alignment:
| Q |
25 |
ttattgagggcattaaccatatgaagtcccaattcattgggattggagtctttactttctgcatattctgcaaaaggtgatagtctaattccaactttat |
124 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| | || ||||| |||||| || |||| | | |||| ||||||||||||| | ||||||||| | | |
|
|
| T |
1046838 |
ttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttattccaactcttt |
1046739 |
T |
|
| Q |
125 |
ctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcacttt |
224 |
Q |
| |
|
| || || |||||||| ||||| |||||||||| ||||| | |||| |||||| || || || | |||||| |||||||||||||||||||||||||| |
|
|
| T |
1046738 |
cggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgttctgtcattcacttt |
1046639 |
T |
|
| Q |
225 |
atctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaac |
286 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||| ||| | |||||||| |||||||||| |
|
|
| T |
1046638 |
atctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaaac |
1046577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 1041607 - 1041529
Alignment:
| Q |
236 |
attgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaatttacatcacattgaacatgtta |
315 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||||||| | ||||||||||||| ||||| || |||||||| ||||||| |
|
|
| T |
1041607 |
attgctcaagtaggtagccatgagttgcatggatttcatc-ccatcaaaacctgaaatttgcaccacattgagcatgtta |
1041529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 108 - 315
Target Start/End: Original strand, 44171262 - 44171469
Alignment:
| Q |
108 |
tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| | ||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
44171262 |
tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct |
44171361 |
T |
|
| Q |
208 |
gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaatttacatcacattga |
307 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
44171362 |
gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattga |
44171461 |
T |
|
| Q |
308 |
acatgtta |
315 |
Q |
| |
|
||||||| |
|
|
| T |
44171462 |
gcatgtta |
44171469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 108 - 315
Target Start/End: Original strand, 44191558 - 44191765
Alignment:
| Q |
108 |
tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| | ||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
44191558 |
tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct |
44191657 |
T |
|
| Q |
208 |
gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacctgcaatttacatcacattga |
307 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
44191658 |
gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattga |
44191757 |
T |
|
| Q |
308 |
acatgtta |
315 |
Q |
| |
|
||||||| |
|
|
| T |
44191758 |
gcatgtta |
44191765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 54102841 - 54102925
Alignment:
| Q |
98 |
aaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgatt |
182 |
Q |
| |
|
||||||| ||||||| |||||||| || ||||| ||||||| |||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
54102841 |
aaggtgaaagtctaacaccaactttgtcagctccaatctcatcaacaactgctttcacaacctctagagggaagcgacaacgatt |
54102925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University