View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17718_low_1 (Length: 925)

Name: NF17718_low_1
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17718_low_1
NF17718_low_1
[»] chr5 (17 HSPs)
chr5 (16-608)||(34590029-34590620)
chr5 (624-908)||(34588803-34589087)
chr5 (217-273)||(13697904-13697959)
chr5 (418-469)||(2941982-2942033)
chr5 (222-281)||(5963409-5963468)
chr5 (218-281)||(32372495-32372557)
chr5 (403-469)||(1621519-1621585)
chr5 (216-281)||(6593178-6593243)
chr5 (216-281)||(32703575-32703639)
chr5 (217-273)||(28776855-28776910)
chr5 (217-281)||(30291140-30291204)
chr5 (216-264)||(38105007-38105055)
chr5 (373-461)||(16869923-16870011)
chr5 (218-280)||(8089679-8089741)
chr5 (217-275)||(40426632-40426689)
chr5 (416-469)||(31677199-31677252)
chr5 (216-281)||(42573906-42573971)
[»] scaffold0040 (1 HSPs)
scaffold0040 (364-469)||(49869-49974)
[»] chr7 (8 HSPs)
chr7 (403-469)||(87254-87320)
chr7 (215-274)||(7612336-7612395)
chr7 (216-281)||(33672957-33673021)
chr7 (216-258)||(425971-426013)
chr7 (238-280)||(21619307-21619349)
chr7 (435-469)||(44235449-44235483)
chr7 (239-281)||(44777109-44777151)
chr7 (220-281)||(28900760-28900820)
[»] chr4 (16 HSPs)
chr4 (216-281)||(26520356-26520421)
chr4 (216-265)||(47399412-47399461)
chr4 (218-280)||(2987069-2987131)
chr4 (403-469)||(20988783-20988849)
chr4 (403-469)||(52831496-52831562)
chr4 (216-273)||(19039659-19039716)
chr4 (403-471)||(41758558-41758626)
chr4 (215-251)||(45104563-45104599)
chr4 (403-467)||(52327343-52327407)
chr4 (403-470)||(24418207-24418274)
chr4 (216-278)||(30066896-30066958)
chr4 (215-257)||(39178386-39178428)
chr4 (403-469)||(44555675-44555741)
chr4 (218-272)||(50298411-50298465)
chr4 (370-468)||(3535176-3535274)
chr4 (216-281)||(47771874-47771938)
[»] chr3 (8 HSPs)
chr3 (216-281)||(30574039-30574104)
chr3 (364-469)||(32326116-32326221)
chr3 (216-279)||(47132246-47132308)
chr3 (216-281)||(34034040-34034104)
chr3 (238-281)||(39980619-39980662)
chr3 (506-551)||(402600-402646)
chr3 (233-281)||(20669076-20669122)
chr3 (216-281)||(29002967-29003031)
[»] chr2 (12 HSPs)
chr2 (217-274)||(12313306-12313363)
chr2 (217-281)||(9174694-9174757)
chr2 (225-281)||(9833042-9833098)
chr2 (403-471)||(15804446-15804514)
chr2 (419-468)||(27679144-27679193)
chr2 (364-469)||(44810061-44810166)
chr2 (215-250)||(12140443-12140478)
chr2 (220-281)||(26626759-26626819)
chr2 (232-281)||(32364851-32364900)
chr2 (216-281)||(41407170-41407234)
chr2 (215-268)||(41880642-41880695)
chr2 (403-468)||(44984304-44984369)
[»] chr1 (7 HSPs)
chr1 (217-273)||(31517872-31517928)
chr1 (216-271)||(35058893-35058948)
chr1 (211-273)||(27820475-27820536)
chr1 (218-270)||(48064189-48064241)
chr1 (403-469)||(20004018-20004084)
chr1 (403-468)||(35272588-35272652)
chr1 (216-273)||(37841877-37841933)
[»] chr8 (8 HSPs)
chr8 (218-273)||(2833465-2833520)
chr8 (218-273)||(2840239-2840294)
chr8 (218-273)||(2844926-2844981)
chr8 (218-281)||(14956432-14956494)
chr8 (403-469)||(29861382-29861447)
chr8 (238-280)||(41589583-41589625)
chr8 (216-257)||(31751707-31751748)
chr8 (403-468)||(36049644-36049709)
[»] scaffold0010 (1 HSPs)
scaffold0010 (403-469)||(166631-166697)
[»] chr6 (3 HSPs)
chr6 (216-258)||(7946023-7946065)
chr6 (220-281)||(847941-848001)
chr6 (216-273)||(35069431-35069487)


Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 16 - 608
Target Start/End: Complemental strand, 34590620 - 34590029
Alignment:
Q  16 cataggctgtgaaggaaccatttgatgtagccttgagctattataactgagattaattttcgcaaacatagaagttgattgtcgatatcaaagttatgtc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34590620 cataggctgtgaaggaaccatttgatgtagccttgagctattataactgagattaattttcggaaacatagaagttgattgtcgatatcaaagttatgtc 34590521  T
Q  116 tttttcaaatttttctgcttctgttagattggtacattgaaggagttctaggtttttcttggtacttgtgaacatcatttagattcattattaactagat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34590520 tttttcaaatttttctgcttctgttagattggtacattgaaggagttctaggttttttttggtacttgtgaacatcatttagattcattattaactagat 34590421  T
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatgggtctgtttggcaacacannnnnnnngagcttat 315  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||        ||||||||    
T  34590420 cctgtttggataaacgacttattttgcagcttataggataagtatttatcatgataagcacttatgggtctgtttggcaacgcattttttttgagcttat 34590321  T
Q  316 ggtttatgtcttatnnnnnnngacatgtttggtaag---cattgtcccattagcttgtagcttatttttacgaacttatagcgnnnnnnnataagctaat 412  Q
    ||||||||||||||       |||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||       ||||||||||    
T  34590320 ggtttatgtcttataaaaaaagacatgtttggtaagcgtcattgtcccattagcttgtagcttatttttaccaacttatagcgtttttttataagctaat 34590221  T
Q  413 ttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaattttttaaattttaaacaatgtcctaagattttataacaagat-- 510  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||      
T  34590220 ttgagtagcttaaagcttaacgtcttttatctcaattttacccatgtaatc---------taaattttaaacaatgtcctaagattttataacaagataa 34590130  T
Q  511 ---aattaaattaaattgttttcgaataagttataaactgttttcattatattttagggagcttaaaaaataagttgaaaacagattgtaagcatgtcat 607  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34590129 ttaaattaaattaaattgttttcgaataagttataaactgttttcattatattttagggagcttaaaaaataagttgaaaacagattgtaagcatgtcat 34590030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 624 - 908
Target Start/End: Complemental strand, 34589087 - 34588803
Alignment:
Q  624 tttatcatttaagagaaaagtttaaataagtcaatctaaataagctcttagcaggtattgctgaccttgtttcatgattgttcttccaataacagtaact 723  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  34589087 tttatcatttaagagaaaagtttaaataagtaaatctaaataagctcttagcaggtattgttgaccttgtttcatgattgttcttccaataacaataact 34588988  T
Q  724 tctttttaagtgcttttagttataannnnnnnaaaatcataaaataaacatatttgaacatagtaagtgataggataactaatttatggcagtaatgtta 823  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34588987 tctttttaagtgcttttagttatagtttttttaaaatcataaaataaacatatttgaacatagtaagtgataggataactaatttatggcagtaatgtta 34588888  T
Q  824 gctacccggacagtgcagtgaaattgaaaattttaacaaaaataacagctaaaagcattatccttctgtcaatgtgtcttgaagg 908  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34588887 cctacccggacagtgcagtgaaaatgaaaattttaacaaaaataacagctaaaagcattatccttctgtcaatgtgtcttgaagg 34588803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 13697959 - 13697904
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||    
T  13697959 ctgtttggataaacaacttattt-gcagcttataacataagcatttatcatgataag 13697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 2941982 - 2942033
Alignment:
Q  418 tagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    ||||||| |||||| |||| |||||||||||||||||| |||||||||||||    
T  2941982 tagcttagagcttatcatcctttatctcaattttacccttgtaatcttaatt 2942033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 5963468 - 5963409
Alignment:
Q  222 tggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||| ||||| ||||||  |||||| |||||||||||||||||||||| ||||||    
T  5963468 tggataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatg 5963409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 32372495 - 32372557
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||| |||||||| ||||||||||| | ||||| |||||||||||||| ||||||    
T  32372495 tgtttggataaacaacttattt-gcagcttatagcacaagcacttatcatgataagcccttatg 32372557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 1621585 - 1621519
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    |||||||||||  ||||||||| |||||| ||  ||||||||||||||||||| || ||||||||||    
T  1621585 ataagctaattcaagtagcttatagcttatcagtttttatctcaattttacccttgcaatcttaatt 1621519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 6593178 - 6593243
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||| ||||| ||| |||||||||| |||| |||||||| ||||| || ||||||    
T  6593178 cctgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatg 6593243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 32703639 - 32703575
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||| || |||| |||||||| ||||||||||| | |||||||||||||||||||| ||||||    
T  32703639 cctgtttagaaaaacaacttattt-gcagcttatagcacaagcatttatcatgataagcgcttatg 32703575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 28776855 - 28776910
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||| |||||||| |||||||||||  |||||| |||||||||||||    
T  28776855 ctgtttggataaacaacttattt-gcagcttatagcctaagcacttatcatgataag 28776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 30291140 - 30291204
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||| | ||||| |||||||||||||| |||| || |||||||||||| | ||||||    
T  30291140 ctgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgataaacgcttatg 30291204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 38105055 - 38105007
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttat 264  Q
    ||||||||||||||| ||||||||||||||||||||  ||||| |||||    
T  38105055 cctgtttggataaacaacttattttgcagcttatagcgtaagcgtttat 38105007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 16870011 - 16869923
Alignment:
Q  373 cttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaa 461  Q
    ||||||||||| | |||||||||       |||||||||||  ||||||||| |||||| ||| |||||| |||||||||||| |||||    
T  16870011 cttatttttactagcttatagcgttttttgataagctaattcaagtagcttatagcttatcattttttatttcaattttacccttgtaa 16869923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 8089679 - 8089741
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    ||||||||||||| ||||| |||| |||| |||| |||||  ||||||||||||||| |||||    
T  8089679 tgtttggataaacaacttaatttgtagctcatagcataagtgtttatcatgataagcgcttat 8089741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 40426632 - 40426689
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagca 275  Q
    |||||||||||||| ||| |||| ||||||||||| | ||||| |||||||||||||||    
T  40426632 ctgtttggataaacaactcattt-gcagcttatagcacaagcacttatcatgataagca 40426689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 469
Target Start/End: Original strand, 31677199 - 31677252
Alignment:
Q  416 agtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    ||||||||| |||||| |||  |||||||||||||||||| | |||||||||||    
T  31677199 agtagcttatagcttatcattgtttatctcaattttacccctctaatcttaatt 31677252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 42573971 - 42573906
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  |||| ||||||||||||||  | |||  |||||||||||||| ||||||    
T  42573971 cctgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatg 42573906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 364 - 469
Target Start/End: Complemental strand, 49974 - 49869
Alignment:
Q  364 agcttgtagcttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatc 463  Q
    ||||| ||||||||||||| || |||||||||       |||||||||||  ||||||||| |||||| ||  ||||||||||||||||||| || ||||    
T  49974 agcttatagcttatttttaagagcttatagcggtttgtgataagctaattcaagtagcttatagcttatcactttttatctcaattttacccttgcaatc 49875  T
Q  464 ttaatt 469  Q
    ||||||    
T  49874 ttaatt 49869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 87320 - 87254
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    |||||||||||  |||||||||||||||||||   |||||||||||||||||| | |||||||||||    
T  87320 ataagctaattcaagtagcttaaagcttaacaatatttatctcaattttacccctctaatcttaatt 87254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 7612336 - 7612395
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagc 274  Q
    ||||||||  |||||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  7612336 tcctgtttcaataaacaacttaatttgcagcttatagcataagcacttatcatgataagc 7612395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 33672957 - 33673021
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||||| |||||| ||||||||||| | ||| |||||| ||||||||| ||||||    
T  33672957 cctgtttggataaactatttattt-gcagcttatagcacaagtatttattatgataagcgcttatg 33673021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 426013 - 425971
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagc 258  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  426013 cctgtttggataaataacttattttgcagcttatagcataagc 425971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 21619307 - 21619349
Alignment:
Q  238 tttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    |||||||||||||| | ||||| ||||||||||||||||||||    
T  21619307 tttgcagcttatagcacaagcacttatcatgataagcacttat 21619349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 44235483 - 44235449
Alignment:
Q  435 tcttttatctcaattttacccatgtaatcttaatt 469  Q
    |||||||||| ||||||||||||||||||||||||    
T  44235483 tcttttatctgaattttacccatgtaatcttaatt 44235449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 44777151 - 44777109
Alignment:
Q  239 ttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  44777151 ttgcagcttatagcataagtgtttatcatgataagcacttatg 44777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 28900760 - 28900820
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||| ||||||||| ||||||    
T  28900760 tttggataaacaacttattt-gcagcttataacacaagcatttattatgataagcgcttatg 28900820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 26520421 - 26520356
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||| ||||| ||||| |||| ||| |||||  ||||||||||||||||||||||    
T  26520421 cctgtttggataaacaacttaatttgctgcttctagcataagtgtttatcatgataagcacttatg 26520356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 47399412 - 47399461
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatc 265  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  47399412 cctgtttggataaacaacttagtttgcagcttataggataagcgtttatc 47399461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 2987069 - 2987131
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    ||||||||||||| | ||| |||||||||||||  |||||  |||||||||||||||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttat 2987131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 20988849 - 20988783
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    |||||||||||  ||||||||| |||||| ||| |||||||||||||||| || | |||||||||||    
T  20988849 ataagctaattcaagtagcttatagcttatcattttttatctcaattttaaccctttaatcttaatt 20988783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 52831496 - 52831562
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    |||||||||||  ||||||||| |||||| ||| |||||||||||||| |||| || ||||||||||    
T  52831496 ataagctaattcaagtagcttatagcttatcattttttatctcaatttgacccctgcaatcttaatt 52831562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 19039659 - 19039716
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    ||||||||||||||| ||||| |||||||||||||  ||| ||| |||||||||||||    
T  19039659 cctgtttggataaacaacttaatttgcagcttataatataggcaattatcatgataag 19039716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 471
Target Start/End: Original strand, 41758558 - 41758626
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatttt 471  Q
    |||||||||||  ||||||||| |||||| ||| || | |||||||||||||||||| ||| |||||||    
T  41758558 ataagctaattcaagtagcttatagcttatcattttctctctcaattttacccatgtcatcataatttt 41758626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 45104599 - 45104563
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttatag 251  Q
    |||||||||||||||||| ||||||||||||||||||    
T  45104599 tcctgtttggataaactaattattttgcagcttatag 45104563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 52327343 - 52327407
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaa 467  Q
    |||||||||||  ||||||||||||||||  || |||| |||||||||||||| |||| ||||||    
T  52327343 ataagctaattcaagtagcttaaagcttataattttttctctcaattttacccttgtagtcttaa 52327407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 24418274 - 24418207
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaattt 470  Q
    |||||||||||  ||||||||| |||||| ||| ||||||||  ||||||||| || |||||||||||    
T  24418274 ataagctaattcaagtagcttatagcttatcattttttatctttattttacccctgcaatcttaattt 24418207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 30066958 - 30066896
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcactt 278  Q
    |||||||| |||||| | ||| |||||||||||||| ||||||  |||| |||||||||||||    
T  30066958 cctgtttgcataaacaatttaatttgcagcttatagcataagcgcttataatgataagcactt 30066896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 39178428 - 39178386
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttataggataag 257  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  39178428 tcctgtttggataaacaacttattttacagcttatagtataag 39178386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 44555741 - 44555675
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    ||||||||||   ||||||||| |||||| |||| |||||||||||||||| | | |||||||||||    
T  44555741 ataagctaatccaagtagcttatagcttatcatcatttatctcaattttactcttttaatcttaatt 44555675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 50298411 - 50298465
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataa 272  Q
    ||||||||||||| ||||| |||| ||||||||| |||| || ||||||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgataa 50298465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 468
Target Start/End: Original strand, 3535176 - 3535274
Alignment:
Q  370 tagcttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaat 468  Q
    |||||||||||||| |||||||||||       |||||||||||  ||||||||| |||||| |||  | ||||  |||||||||| |||| |||||||    
T  3535176 tagcttatttttactaacttatagcgttttttgataagctaattcaagtagcttatagcttatcattatatatccaaattttacccctgtattcttaat 3535274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 47771874 - 47771938
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  ||||||||| ||||||||| ||||||  ||||||| |||||| ||||||    
T  47771874 cctgtttggataaacagcttattttggagcttatagcataagcgcttatcat-ataagcgcttatg 47771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 30574104 - 30574039
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  | || |||||||||||||  |||||||||||||||||||||| ||||||    
T  30574104 cctgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatg 30574039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 469
Target Start/End: Complemental strand, 32326221 - 32326116
Alignment:
Q  364 agcttgtagcttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatc 463  Q
    |||||||||||||||||||| | ||||||| |       |||||||||||  ||||||||| |||||| |||  ||||| |||||||||||| || ||||    
T  32326221 agcttgtagcttatttttactagcttatagaggtttttgataagctaattcaagtagcttatagcttatcattatttatatcaattttacccctgcaatc 32326122  T
Q  464 ttaatt 469  Q
    ||||||    
T  32326121 ttaatt 32326116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 47132246 - 47132308
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcactta 279  Q
    ||||||||||||||| ||||||||| || ||||||| | ||||| |||||||||||||||||||    
T  47132246 cctgtttggataaacaacttatttt-caccttatagcacaagcacttatcatgataagcactta 47132308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 34034040 - 34034104
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||| ||||||||| |||||||||| | | ||  |||||||||||||||||||||    
T  34034040 cctgtttggataaacaacttatttt-cagcttatagaacaggcgcttatcatgataagcacttatg 34034104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 39980619 - 39980662
Alignment:
Q  238 tttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||| || || |||||||||||||||||||||    
T  39980619 tttgcagcttataggacaaacacttatcatgataagcacttatg 39980662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 402646 - 402600
Alignment:
Q  506 aagataattaaatt-aaattgttttcgaataagttataaactgtttt 551  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||    
T  402646 aagataattaaatttaaattgttttcgtataagttataagctgtttt 402600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 20669076 - 20669122
Alignment:
Q  233 cttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||| |||||||||||  | |||||||||||||||||||||||||||||    
T  20669076 cttagtttgcagctta--gtataagcatttatcatgataagcacttatg 20669122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 29003031 - 29002967
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||  | |||||| ||||||||||| | |||| ||||||||||||| ||||||||    
T  29003031 cctgtttggataaataatttattt-gcagcttatagtaaaagcgtttatcatgataaacacttatg 29002967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 12313363 - 12313306
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagc 274  Q
    ||||||||||||||  ||||||||||||||||||| |||||||  |||||||||||||    
T  12313363 ctgtttggataaacatcttattttgcagcttatagtataagcacgtatcatgataagc 12313306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 9174694 - 9174757
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||| |||||||| |||||||||  ||| ||||||||||||||||| ||||||||    
T  9174694 ctgtttggataaacaacttattt-gcagcttatgagattagcatttatcatgataaacacttatg 9174757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 9833042 - 9833098
Alignment:
Q  225 ataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||    
T  9833042 ataaacaacttaatttacagcttatagcataagcatttatcatgataaacacttatg 9833098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 471
Target Start/End: Original strand, 15804446 - 15804514
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatttt 471  Q
    |||||||||||  ||||||||| |||||| |||  |||||||||||||||||| | |||||||||||||    
T  15804446 ataagctaattcaagtagcttatagcttatcattatttatctcaattttacccttctaatcttaatttt 15804514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 27679144 - 27679193
Alignment:
Q  419 agcttaaagcttaacatcttttatctcaattttacccatgtaatcttaat 468  Q
    |||||| |||||| |||  |||||||||||||||||||||||||||||||    
T  27679144 agcttatagcttatcattatttatctcaattttacccatgtaatcttaat 27679193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 364 - 469
Target Start/End: Original strand, 44810061 - 44810166
Alignment:
Q  364 agcttgtagcttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatc 463  Q
    ||||| |||||||||||||| | ||| |||||       |||||||||||  ||||||||| |  ||| ||| ||||||||||||||||||| ||||| |    
T  44810061 agcttatagcttatttttactagcttttagcgttttttaataagctaattcaagtagcttatatgttaccattttttatctcaattttacccttgtaacc 44810160  T
Q  464 ttaatt 469  Q
    ||||||    
T  44810161 ttaatt 44810166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 12140443 - 12140478
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttata 250  Q
    |||||||||||||||| |||||||||||||||||||    
T  12140443 tcctgtttggataaacaacttattttgcagcttata 12140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 26626759 - 26626819
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||  |||||||    
T  26626759 tttggataaacaacttattt-gcagcttatagcataagctcttatcatgataaatacttatg 26626819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 32364900 - 32364851
Alignment:
Q  232 acttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||| ||||||||| || || | |||||||||||||||||||||    
T  32364900 acttattttgtagcttatagcatgagaacttatcatgataagcacttatg 32364851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 41407170 - 41407234
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  ||| ||| ||||||||||| | ||||  |||||||||||||||||||||    
T  41407170 cctgtttggataaacagcttgttt-gcagcttatagcacaagcgcttatcatgataagcacttatg 41407234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 41880695 - 41880642
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttataggataagcatttatcatg 268  Q
    |||||||||||||||| ||||| |||||||||||||| | ||||  ||||||||    
T  41880695 tcctgtttggataaacaacttactttgcagcttatagcacaagcgcttatcatg 41880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 44984369 - 44984304
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaat 468  Q
    |||||||||||  ||||||||| || ||| ||  |||||||||||||||||||  |||||||||||    
T  44984369 ataagctaattcaagtagcttataggttatcactttttatctcaattttaccctagtaatcttaat 44984304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 31517928 - 31517872
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||   |||| |||||||||||||| |||||||||||||||||||||    
T  31517928 ctgtttggataaatagcttaatttgcagcttatagcataagcatttatcatgataag 31517872  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 35058948 - 35058893
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgata 271  Q
    |||||||||||||||  ||||||||||| ||||||| ||||||| |||||||||||    
T  35058948 cctgtttggataaacagcttattttgcaacttatagcataagcacttatcatgata 35058893  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 27820536 - 27820475
Alignment:
Q  211 tagatcctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||| ||||||||||||||| |||||||| ||||||||||| ||||||  |||||||||||||    
T  27820536 tagaccctgtttggataaacaacttattt-gcagcttatagcataagcgcttatcatgataag 27820475  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 48064189 - 48064241
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgat 270  Q
    ||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||    
T  48064189 tgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 20004018 - 20004084
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    |||||||||||  ||||||||| |||||| || |||||||||| ||||||| | || ||||||||||    
T  20004018 ataagctaattcaagtagcttatagcttatcaccttttatctcgattttactcctgcaatcttaatt 20004084  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 35272652 - 35272588
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaat 468  Q
    |||||||||||  |||||||||  |||||  | ||||||||||||||||||||||| |||||||||    
T  35272652 ataagctaattccagtagcttatggcttataa-cttttatctcaattttacccatgcaatcttaat 35272588  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 37841877 - 37841933
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    ||||||||| ||||| ||||| ||||||||| |||| ||||||| |||||||||||||    
T  37841877 cctgtttgg-taaacaacttaatttgcagctaatagcataagcacttatcatgataag 37841933  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 2833520 - 2833465
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||| ||||||||||||||||||| |||||   |||||||||||||    
T  2833520 tgtttggataaactgcttattttgcagcttatagcataagtgcttatcatgataag 2833465  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 2840239 - 2840294
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||| |||||| |||||||||||||||||||| |||||   |||||||||||||    
T  2840239 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcatgataag 2840294  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 2844926 - 2844981
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||| |||||| |||||||||||||||||||| |||||   |||||||||||||    
T  2844926 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcatgataag 2844981  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 14956494 - 14956432
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||| |||||||| ||||||||||| | || |  |||||||||||||||||||||    
T  14956494 tgtttggataaacaacttattt-gcagcttatagcacaatcgcttatcatgataagcacttatg 14956432  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 29861382 - 29861447
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    |||||||||||  | ||||||| |||||| ||| |||| |||||||||||||| |||||||||||||    
T  29861382 ataagctaattgaattagcttatagcttatcat-ttttctctcaattttacccttgtaatcttaatt 29861447  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 41589583 - 41589625
Alignment:
Q  238 tttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    |||||||||||||| | |||||||||||||||||||| |||||    
T  41589583 tttgcagcttatagcacaagcatttatcatgataagcgcttat 41589625  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 31751748 - 31751707
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataag 257  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  31751748 cctgtttggataaacaacttaatttgcagcttatagtataag 31751707  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 36049709 - 36049644
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaat 468  Q
    |||||||||||| |||| |||| || ||| |||  |||||||||||||||||  ||||||||||||    
T  36049709 ataagctaatttaagtaacttatagtttatcattatttatctcaattttaccattgtaatcttaat 36049644  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 166631 - 166697
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatcttaatt 469  Q
    ||||||||||   |||||| || |||||| |||| |||||||| ||||||||| |||||||||||||    
T  166631 ataagctaatccaagtagcctatagcttatcatcatttatctctattttacccttgtaatcttaatt 166697  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 7946065 - 7946023
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagc 258  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||    
T  7946065 cctgtttggataaacaacttattttgtagcttatagcataagc 7946023  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 847941 - 848001
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||| |||| |||||||||||||| || ||||| ||||||| |||||| ||||||    
T  847941 tttggataaacaactt-ttttgcagcttataagacaagcagttatcataataagcgcttatg 848001  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 35069431 - 35069487
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    ||||||| ||||||| |||||||| ||||||||||| | |||| ||||||||||||||    
T  35069431 cctgttttgataaacaacttattt-gcagcttatagcacaagcgtttatcatgataag 35069487  T

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